LINC02778 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2778

GC01P060243
GIFtS:
5

Aliases for LINC02778 Gene

Subcategory (RNA class) for LINC02778 Gene

lncRNA

Aliases for LINC02778 Gene

  • Long Intergenic Non-Protein Coding RNA 2778 2 3 5

External Ids for LINC02778 Gene

Summaries for LINC02778 Gene

GeneCards Summary for LINC02778 Gene

LINC02778 (Long Intergenic Non-Protein Coding RNA 2778) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02778 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02778 Gene

Genomics for LINC02778 Gene

GeneHancer (GH) Regulatory Elements for LINC02778 Gene

Promoters and enhancers for LINC02778 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J060227 Enhancer 0.6 Ensembl dbSUPER 0.4 -14.7 -14723 1 FOS USF1 JUN JUND piR-47211-031 LINC02778 LOC105378761
GH01J060255 Enhancer 0.6 Ensembl 0.4 +13.0 12978 0.8 ZNF316 MAFF MAFK NFE2 FOS NFE2L1 MAFG GATA2 NFE2L2 JUND piR-39416-001 LINC02778 lnc-HOOK1-3 HSALNG0003993 LOC105378761
GH01J060234 Enhancer 0.5 UCNEbase dbSUPER 0.4 -7.9 -7909 0.2 LINC02778 piR-47211-031 LOC105378761
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02778 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02778 Gene

Genomic Locations for LINC02778 Gene
chr1:60,242,823-60,258,619
(GRCh38/hg38)
Size:
15,797 bases
Orientation:
Plus strand
chr1:60,580,547-60,615,351
(GRCh37/hg19)
Size:
34,805 bases
Orientation:
Plus strand

Genomic View for LINC02778 Gene

Genes around LINC02778 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02778 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02778 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02778 Gene

Proteins for LINC02778 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02778 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02778 Gene

Domains & Families for LINC02778 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02778 Gene

Function for LINC02778 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02778 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02778 Gene

Localization for LINC02778 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02778 Gene

Pathways & Interactions for LINC02778 Gene

PathCards logo

SuperPathways for LINC02778 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02778 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02778 Gene

Drugs & Compounds for LINC02778 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02778 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC02778 Gene

2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02778 Gene

No ASD Table

Relevant External Links for LINC02778 Gene

GeneLoc Exon Structure for
LINC02778

Expression for LINC02778 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02778 Gene

Orthologs for LINC02778 Gene

Evolution for LINC02778 Gene

ENSEMBL:
Gene Tree for LINC02778 (if available)
TreeFam:
Gene Tree for LINC02778 (if available)

No data available for Orthologs for LINC02778 Gene

Paralogs for LINC02778 Gene

No data available for Paralogs for LINC02778 Gene

Variants for LINC02778 Gene

Additional dbSNP identifiers (rs#s) for LINC02778 Gene

Additional Variant Information for LINC02778 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02778

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02778 Gene

Disorders for LINC02778 Gene

No disorders were found for LINC02778 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02778 Gene

Publications for LINC02778 Gene

No publications were found for LINC02778 Gene.

No data available for Mastermind for LINC02778 Gene

Products for LINC02778 Gene

Sources for LINC02778 Gene