Aliases for LINC02778 Gene

Data sources for LINC02778 Gene:

Subcategory (RNA class) for LINC02778 Gene

lncRNA

Aliases for LINC02778 Gene

External Ids for LINC02778 Gene

Previous GeneCards Identifiers for LINC02778 Gene

  • GC01P060243

Summaries for LINC02778 Gene

GeneCards Summary for LINC02778 Gene

LINC02778 (Long Intergenic Non-Protein Coding RNA 2778) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02778 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02778 Gene

Genomics for LINC02778 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02778 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J060114 Enhancer 0.3 Ensembl 250.7 +0.2 175 0.4 POLR2A LINC02778 C1orf87 HSALNG0003994 HSALNG0003992 NFIA
GH01J060132 Promoter/Enhancer 1.2 EPDnew FANTOM5 Ensembl ENCODE 0.4 +18.7 18676 1.8 SPI1 MAX JUND ZNF652 POLR2A EP300 CEBPG C1orf87 HSALNG0003994 LOC107984963 LINC02778 HSALNG0003992 NFIA
GH01J060279 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.1 +166.2 166176 2.8 CTCF REST MAFF RXRA SMC3 RAD21 TCF7L2 JUND ZFP37 ZNF24 LOC107985379 piR-59297-029 lnc-HOOK1-3 LINC02778 C1orf87 NFIA
GH01J060265 Enhancer 0.9 Ensembl ENCODE 0.1 +151.5 151480 1.1 CEBPA FOXA2 SMAD4 RXRA RARA ZBTB33 BCL6 JUND SOX5 HMG20A C1orf87 LOC107984962 HSALNG0003992 LOC105378761 lnc-HOOK1-3 LINC02778 NFIA
GH01J060274 Enhancer 0.8 ENCODE dbSUPER 0.1 +160.3 160298 1.5 FOXA2 RXRA ZBTB33 RARA BCL6 JUND FOXP1 HNF4A FOXA1 RAD21 LOC105378761 HSALNG0003992 LOC107984962 lnc-HOOK1-3 LINC02778 C1orf87 NFIA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02778 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02778 Gene

Latest Assembly
chr1:60,114,825-60,289,347
(GRCh38/hg38)
Size:
174,523 bases
Orientation:
Plus strand

Previous Assembly
chr1:60,580,547-60,615,351
(GRCh37/hg19 by Ensembl)
Size:
34,805 bases
Orientation:
Plus strand

Genomic View for LINC02778 Gene

Genes around LINC02778 on UCSC Golden Path with GeneCards custom track
LINC02778 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02778 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02778 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02778 Gene

Proteins for LINC02778 Gene

Post-translational modifications for LINC02778 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02778 Gene

Domains & Families for LINC02778 Gene

Gene Families for LINC02778 Gene

genes like me logo Genes that share domains with LINC02778: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02778 Gene

Function for LINC02778 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02778 Gene

Localization for LINC02778 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02778 Gene

Pathways & Interactions for LINC02778 Gene

PathCards logo

SuperPathways for LINC02778 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02778 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02778 Gene

Drugs & Compounds for LINC02778 Gene

No Compound Related Data Available

Transcripts for LINC02778 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02778 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000B3E33_9606 lncRNA 683 3

Ensembl: ENST00000456878 (view in UCSC) ,

LNCipedia: lnc-HOOK1-2:1,

NONCODE: NONHSAT003582.2,

URS0000EF297C_9606 lncRNA 1160 1

Ensembl: ENST00000659925 (view in UCSC) ,

URS00008BB765_9606 lncRNA 270 3

LncBook: HSALNT0007782,

LNCipedia: lnc-HOOK1-2:2,

NONCODE: NONHSAT003583.2,

URS00009B81F8_9606 lncRNA 810 2

LncBook: HSALNT0007777,

NONCODE: NONHSAT149043.1,

URS00009AF40F_9606 lncRNA 783 2

LncBook: HSALNT0007778,

NONCODE: NONHSAT149044.1,

LINC02778 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02778 Gene

No ASD Table

Relevant External Links for LINC02778 Gene

GeneLoc Exon Structure for
LINC02778

No data available for mRNA/cDNA for LINC02778 Gene

Expression for LINC02778 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02778 Gene

Orthologs for LINC02778 Gene

Evolution for LINC02778 Gene

ENSEMBL:
Gene Tree for LINC02778 (if available)
TreeFam:
Gene Tree for LINC02778 (if available)

No data available for Orthologs for LINC02778 Gene

Paralogs for LINC02778 Gene

No data available for Paralogs for LINC02778 Gene

Variants for LINC02778 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02778 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02778 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02778

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02778 Gene

Disorders for LINC02778 Gene

No disorders were found for LINC02778 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02778 Gene

Publications for LINC02778 Gene

No publications were found for LINC02778 Gene.

No data available for Mastermind for LINC02778 Gene

Products for LINC02778 Gene

Sources for LINC02778 Gene