Aliases for LINC02774 Gene

Subcategory (RNA class) for LINC02774 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02774 Gene

  • Long Intergenic Non-Protein Coding RNA 2774 2 3 5
  • NONHSAG004846 92
  • HSALNG0012050 167
  • Lnc-ZBTB18-2 168
  • LINC02774 2

External Ids for LINC02774 Gene

Summaries for LINC02774 Gene

GeneCards Summary for LINC02774 Gene

LINC02774 (Long Intergenic Non-Protein Coding RNA 2774) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02774 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02774 Gene

Genomics for LINC02774 Gene

GeneHancer (GH) Regulatory Elements for LINC02774 Gene

Promoters and enhancers for LINC02774 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J243916 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 500.7 +0.0 18 2.8 ZSCAN5C TCF12 JUND TEAD4 ZNF10 ZBTB26 ZNF510 MCM3 HDAC2 MXI1 LINC02774 COX20 DESI2 AKT3 HNRNPU ENSG00000236031 SDCCAG8 CEP170 lnc-AKT3-4
GH01J243923 Enhancer 0.8 ENCODE 0.4 +8.5 8487 4.8 EP300 TCF12 JUND FOS ZNF639 ZEB1 OSR2 BCL11A ZNF316 ZBTB17 HNRNPU lnc-AKT3-4 LINC02774 lnc-AKT3-1
GH01J244046 Promoter/Enhancer 3 VISTA UCNEbase EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.1 +133.2 133193 9.1 HNRNPK ZBTB40 EP300 SIN3A NRF1 POLR2G SP1 PHF8 ZNF639 ZNF10 ZBTB18 lnc-AKT3-2 COX20 DESI2 AKT3 HNRNPU ENSG00000272195 ENSG00000236031 ADSS2 SDCCAG8
GH01J243930 Enhancer 0.7 Ensembl ENCODE CraniofacialAtlas 0.4 +13.8 13844 1.6 SP1 BACH1 lnc-AKT3-4 LINC02774 lnc-AKT3-1
GH01J243938 Enhancer 0.8 Ensembl 0.4 +21.6 21629 2 ZNF316 MAFF GABPA TRIM24 ZNF592 PBX2 NFE2 FOSL1 EHMT2 ZNF644 lnc-AKT3-4 LINC02774 lnc-AKT3-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02774 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02774 Gene

Genomic Locations for LINC02774 Gene
chr1:243,917,372-244,047,318
(GRCh38/hg38)
Size:
129,947 bases
Orientation:
Plus strand
chr1:244,080,704-244,210,619
(GRCh37/hg19)
Size:
129,916 bases
Orientation:
Plus strand

Genomic View for LINC02774 Gene

Genes around LINC02774 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02774 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02774 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02774 Gene

Proteins for LINC02774 Gene

Post-translational modifications for LINC02774 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02774 Gene

Domains & Families for LINC02774 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02774 Gene

Function for LINC02774 Gene

Phenotypes From GWAS Catalog for LINC02774 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02774 Gene

Localization for LINC02774 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02774 Gene

Pathways & Interactions for LINC02774 Gene

PathCards logo

SuperPathways for LINC02774 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02774 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02774 Gene

Drugs & Compounds for LINC02774 Gene

No Compound Related Data Available

Transcripts for LINC02774 Gene

mRNA/cDNA for LINC02774 Gene

9 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
6 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02774 Gene

No ASD Table

Relevant External Links for LINC02774 Gene

GeneLoc Exon Structure for
LINC02774

Expression for LINC02774 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02774

SOURCE GeneReport for Unigene cluster for LINC02774 Gene:

Hs.209374
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02774 Gene

Orthologs for LINC02774 Gene

Evolution for LINC02774 Gene

ENSEMBL:
Gene Tree for LINC02774 (if available)
TreeFam:
Gene Tree for LINC02774 (if available)

No data available for Orthologs for LINC02774 Gene

Paralogs for LINC02774 Gene

No data available for Paralogs for LINC02774 Gene

Variants for LINC02774 Gene

Additional dbSNP identifiers (rs#s) for LINC02774 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02774 Gene

Variant ID Type Subtype PubMed ID
esv1523991 CNV insertion 17803354
esv1639370 CNV insertion 17803354
esv3360870 CNV insertion 20981092
esv3431844 CNV duplication 20981092
esv3589398 CNV gain 21293372
esv3589399 CNV gain 21293372
nsv1069425 CNV deletion 25765185
nsv1125484 CNV tandem duplication 24896259
nsv1143481 CNV deletion 24896259
nsv1145415 CNV deletion 24896259
nsv160658 CNV insertion 16902084
nsv512761 CNV insertion 21212237
nsv5143 CNV deletion 18451855
nsv833104 CNV gain+loss 17160897

Additional Variant Information for LINC02774 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02774

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02774 Gene

Disorders for LINC02774 Gene

No disorders were found for LINC02774 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02774 Gene

Publications for LINC02774 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 54
  2. Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans. (PMID: 23400010) Del-Aguila JL … Boerwinkle E (The pharmacogenomics journal 2014) 3 54
  3. Genome-wide meta-analysis for severe diabetic retinopathy. (PMID: 21441570) Grassi MA … Nicolae DL (Human molecular genetics 2011) 3 54

No data available for Mastermind for LINC02774 Gene

Products for LINC02774 Gene

Sources for LINC02774 Gene