Aliases for LINC02772 Gene

Subcategory (RNA class) for LINC02772 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LINC02772 Gene

  • Long Intergenic Non-Protein Coding RNA 2772 2 3 5
  • HSALNG0007670 167
  • Lnc-LRRC71-4 168
  • LINC02772 2

External Ids for LINC02772 Gene

Summaries for LINC02772 Gene

GeneCards Summary for LINC02772 Gene

LINC02772 (Long Intergenic Non-Protein Coding RNA 2772) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02772 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02772 Gene

Genomics for LINC02772 Gene

GeneHancer (GH) Regulatory Elements for LINC02772 Gene

Promoters and enhancers for LINC02772 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J157273 Enhancer 1.2 FANTOM5 ENCODE 506.7 +0.8 757 2.4 ZSCAN5C NRF1 PHB2 ZIC2 ZNF423 AFF1 HES1 CTBP1 TRIM25 ZNF341 LINC02772 RRNAD1 ENSG00000237842 PRCC LOC105371456 HSALNG0007666
GH01J157278 Enhancer 1.2 FANTOM5 Ensembl 8.2 +5.5 5544 1.8 BCLAF1 PHB2 ZBTB11 AFF1 TARDBP HES1 TOE1 MYC RUNX1 CTBP1 HSALNG0007666 LOC105371456 LINC02772 FCRL3
GH01J157239 Enhancer 1.1 Ensembl ENCODE 7 -34.1 -34059 4.2 EP300 FOXK2 POLR2G NCOR1 KDM6A TCF7 FOXA1 ZBTB25 SMARCC2 SKI LINC02772 ENSG00000228239 piR-48553-021 LOC105371456
GH01J157233 Enhancer 0.9 Ensembl ENCODE 7.3 -38.5 -38507 2.7 ZNF217 CTBP1 GATAD2B NCOR1 ZNF316 FOXP1 ELF1 TAL1 DPF2 TCF12 ENSG00000228239 piR-57137-001 LINC02772 ENSG00000284592 LOC105371456
GH01J157962 Enhancer 0.9 Ensembl ENCODE 4.8 +689.3 689341 2.6 CTCF JUND FOS ZNF639 TRIM28 REST RAD21 TRIM22 ATF2 ZEB1 ENSG00000237842 KIRREL1 CD1E LINC02772 HSALNG0007703 LOC105371459
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02772 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02772 Gene

Genomic Locations for LINC02772 Gene
chr1:157,273,760-157,283,968
(GRCh38/hg38)
Size:
10,209 bases
Orientation:
Plus strand
chr1:157,250,506-157,252,858
(GRCh37/hg19)
Size:
2,353 bases
Orientation:
Plus strand

Genomic View for LINC02772 Gene

Genes around LINC02772 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02772 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02772 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02772 Gene

Proteins for LINC02772 Gene

Post-translational modifications for LINC02772 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02772 Gene

Domains & Families for LINC02772 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02772 Gene

Function for LINC02772 Gene

Phenotypes From GWAS Catalog for LINC02772 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02772 Gene

Localization for LINC02772 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02772 Gene

Pathways & Interactions for LINC02772 Gene

PathCards logo

SuperPathways for LINC02772 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02772 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02772 Gene

Drugs & Compounds for LINC02772 Gene

No Compound Related Data Available

Transcripts for LINC02772 Gene

mRNA/cDNA for LINC02772 Gene

8 RNACentral transcripts :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02772 Gene

No ASD Table

Relevant External Links for LINC02772 Gene

GeneLoc Exon Structure for
LINC02772

Expression for LINC02772 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02772 Gene

Orthologs for LINC02772 Gene

Evolution for LINC02772 Gene

ENSEMBL:
Gene Tree for LINC02772 (if available)
TreeFam:
Gene Tree for LINC02772 (if available)

No data available for Orthologs for LINC02772 Gene

Paralogs for LINC02772 Gene

No data available for Paralogs for LINC02772 Gene

Variants for LINC02772 Gene

Additional dbSNP identifiers (rs#s) for LINC02772 Gene

Additional Variant Information for LINC02772 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02772

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02772 Gene

Disorders for LINC02772 Gene

No disorders were found for LINC02772 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02772 Gene

Publications for LINC02772 Gene

No publications were found for LINC02772 Gene.

No data available for Mastermind for LINC02772 Gene

Products for LINC02772 Gene

Sources for LINC02772 Gene