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Aliases for LINC02772 Gene

Subcategory (RNA class) for LINC02772 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02772 Gene

  • Long Intergenic Non-Protein Coding RNA 2772 2 3
  • Novel Transcript 5
  • AL138900.2 5

External Ids for LINC02772 Gene

Summaries for LINC02772 Gene

GeneCards Summary for LINC02772 Gene

LINC02772 (Long Intergenic Non-Protein Coding RNA 2772) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02772 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02772 Gene

Genomics for LINC02772 Gene

GeneHancer (GH) Regulatory Elements for LINC02772 Gene

Promoters and enhancers for LINC02772 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J157273 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE 606.7 -0.5 -492 2.4 CBFA2T2 ZNF148 MLLT1 ZNF384 BACH1 TRIM24 SP7 MZF1 EGR1 SMARCA4 LINC02772 RRNAD1 ENSG00000237842 PRCC LOC105371456 ENSG00000228239
GH01J157276 Enhancer 0.4 FANTOM5 600.7 +1.2 1206 0.3 ZFHX2 LINC02772 LOC105371456
GH01J157277 Enhancer 0.3 FANTOM5 605.7 +1.6 1555 0.3 ZFHX2 LINC02772 LOC105371456
GH01J157233 Enhancer 1.2 Ensembl ENCODE 7.3 -37.2 -37155 7.9 ZNF652 SP1 ELF3 CBFA2T2 NKRF MLLT1 CEBPG RERE HNF1A PPARG ENSG00000228239 LINC02772 LOC105371456
GH01J157278 Promoter/Enhancer 1.3 FANTOM5 Ensembl 6.5 +3.9 3852 0.4 CBFA2T2 ZNF639 EGR1 CAVIN1 RNF2 IKZF1 HDAC1 MTA2 SOX6 MGA LOC105371456 LINC02772 FCRL3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02772 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02772 Gene

Genomic Locations for LINC02772 Gene
chr1:157,275,009-157,283,617
(GRCh38/hg38)
Size:
8,609 bases
Orientation:
Plus strand
chr1:157,250,506-157,252,858
(GRCh37/hg19)
Size:
2,353 bases
Orientation:
Plus strand

Genomic View for LINC02772 Gene

Genes around LINC02772 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02772 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02772 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02772 Gene

Proteins for LINC02772 Gene

Post-translational modifications for LINC02772 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02772 Gene

Domains & Families for LINC02772 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02772 Gene

Function for LINC02772 Gene

Phenotypes From GWAS Catalog for LINC02772 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02772 Gene

Localization for LINC02772 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02772 Gene

Pathways & Interactions for LINC02772 Gene

PathCards logo

SuperPathways for LINC02772 Gene

No Data Available

Interacting Proteins for LINC02772 Gene

Gene Ontology (GO) - Biological Process for LINC02772 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02772 Gene

Drugs & Compounds for LINC02772 Gene

No Compound Related Data Available

Transcripts for LINC02772 Gene

mRNA/cDNA for LINC02772 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02772 Gene

No ASD Table

Relevant External Links for LINC02772 Gene

GeneLoc Exon Structure for
LINC02772
ECgene alternative splicing isoforms for
LINC02772

Expression for LINC02772 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02772 Gene

Orthologs for LINC02772 Gene

Evolution for LINC02772 Gene

ENSEMBL:
Gene Tree for LINC02772 (if available)
TreeFam:
Gene Tree for LINC02772 (if available)

No data available for Orthologs for LINC02772 Gene

Paralogs for LINC02772 Gene

No data available for Paralogs for LINC02772 Gene

Variants for LINC02772 Gene

Sequence variations from dbSNP and Humsavar for LINC02772 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000499355 -- 157,279,065(+) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000579668 -- 157,274,733(+) T/C upstream_transcript_variant
rs1000944873 -- 157,279,993(+) T/C intron_variant
rs1001723001 -- 157,279,706(+) T/C genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1001840103 -- 157,274,505(+) A/T upstream_transcript_variant

Additional Variant Information for LINC02772 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02772

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02772 Gene

Disorders for LINC02772 Gene

No disorders were found for LINC02772 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02772 Gene

Publications for LINC02772 Gene

No publications were found for LINC02772 Gene.

No data available for External Links for LINC02772 Gene

Products for LINC02772 Gene

Sources for LINC02772 Gene

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