Aliases for LINC02771 Gene

Subcategory (RNA class) for LINC02771 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02771 Gene

  • Long Intergenic Non-Protein Coding RNA 2771 2 3 5
  • LINC02771 2 5
  • NONHSAG004232.2 91
  • Lnc-TMEM206-2 165
  • HSALNG0010358 164

External Ids for LINC02771 Gene

Summaries for LINC02771 Gene

GeneCards Summary for LINC02771 Gene

LINC02771 (Long Intergenic Non-Protein Coding RNA 2771) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02771 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02771 Gene

Genomics for LINC02771 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02771 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J212471 Enhancer 0.3 dbSUPER 648.6 +0.8 771 1.8 ZNF664 LINC02771 NENF ENSG00000235862 FAM71A ATF3 BATF3 PACC1 ENSG00000212187 VASH2 MG828462
GH01J212481 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 47.9 -13.0 -13012 8.2 CREB1 ATF7 PRDM10 ZNF629 RFX1 LEF1 ZNF692 BACH1 JUND FOXA1 lnc-TMEM206-7 LINC02771 ATF3 ANGEL2 BATF3 RPL21P28 lnc-NENF-5 NENF
GH01J212476 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 42.4 -4.9 -4868 1.7 SP1 CTCF ZNF629 BACH1 JUND LARP7 ZNF143 RELA REST ZNF24 LINC02771 ATF3 NENF ENSG00000235862 FAM71A BATF3 PACC1 RPL21P28 ENSG00000212187 VASH2
GH01J212490 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 40.4 -18.5 -18494 1.3 ZNF584 ZNF589 IKZF1 RNF2 ZNF148 SPI1 lnc-TMEM206-8 LINC02771 ATF3 BATF3 lnc-NENF-5 NENF
GH01J212497 Enhancer 0.7 ENCODE 39.5 -25.5 -25476 1.1 GATAD2A SOX13 IKZF1 JUND ZNF24 IKZF2 CEBPA EGR1 CEBPB FOXA1 LINC02771 ATF3 NENF BATF3 PACC1 ENSG00000286213 lnc-TMEM206-8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02771 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02771 Gene

Genomic Locations for LINC02771 Gene
chr1:212,466,699-212,472,905
(GRCh38/hg38)
Size:
6,207 bases
Orientation:
Minus strand
chr1:212,640,158-212,641,085
(GRCh37/hg19)
Size:
928 bases
Orientation:
Minus strand

Genomic View for LINC02771 Gene

Genes around LINC02771 on UCSC Golden Path with GeneCards custom track
LINC02771 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02771 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02771 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02771 Gene

Proteins for LINC02771 Gene

Post-translational modifications for LINC02771 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02771 Gene

Domains & Families for LINC02771 Gene

Gene Families for LINC02771 Gene

genes like me logo Genes that share domains with LINC02771: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02771 Gene

Function for LINC02771 Gene

Phenotypes From GWAS Catalog for LINC02771 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02771 Gene

Localization for LINC02771 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02771 Gene

Pathways & Interactions for LINC02771 Gene

PathCards logo

SuperPathways for LINC02771 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02771 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02771 Gene

Drugs & Compounds for LINC02771 Gene

No Compound Related Data Available

Transcripts for LINC02771 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02771 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF61A0_9606 lncRNA 686 2

HGNC: 54291,

Ensembl: ENST00000661486 (view in UCSC) ,

URS0000EF5708_9606 lncRNA 644 1

Ensembl: ENST00000439570 (view in UCSC) ,

URS00003C1768_9606 lncRNA 359 3

LncBook: HSALNT0021429,

LNCipedia: lnc-TMEM206-2:1,

NONCODE: NONHSAT009372.2,

URS00009B1890_9606 lncRNA 359 2

LncBook: HSALNT0021430,

NONCODE: NONHSAT152874.1,

LINC02771 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02771 Gene

No ASD Table

Relevant External Links for LINC02771 Gene

GeneLoc Exon Structure for
LINC02771

No data available for mRNA/cDNA for LINC02771 Gene

Expression for LINC02771 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02771 Gene

Orthologs for LINC02771 Gene

Evolution for LINC02771 Gene

ENSEMBL:
Gene Tree for LINC02771 (if available)
TreeFam:
Gene Tree for LINC02771 (if available)

No data available for Orthologs for LINC02771 Gene

Paralogs for LINC02771 Gene

No data available for Paralogs for LINC02771 Gene

Variants for LINC02771 Gene

Additional dbSNP identifiers (rs#s) for LINC02771 Gene

Additional Variant Information for LINC02771 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02771

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02771 Gene

Disorders for LINC02771 Gene

No disorders were found for LINC02771 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02771 Gene

Publications for LINC02771 Gene

No publications were found for LINC02771 Gene.

No data available for Mastermind for LINC02771 Gene

Products for LINC02771 Gene

Sources for LINC02771 Gene