Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC02771 Gene

Subcategory (RNA class) for LINC02771 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02771 Gene

  • Long Intergenic Non-Protein Coding RNA 2771 2 3
  • Novel Transcript 5
  • AC092803.1 5

External Ids for LINC02771 Gene

Summaries for LINC02771 Gene

GeneCards Summary for LINC02771 Gene

LINC02771 (Long Intergenic Non-Protein Coding RNA 2771) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02771 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02771 Gene

Genomics for LINC02771 Gene

GeneHancer (GH) Regulatory Elements for LINC02771 Gene

Promoters and enhancers for LINC02771 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J212471 Enhancer 0.3 dbSUPER 648.6 +0.7 731 1.8 ZNF664 LINC02771 NENF ENSG00000235862 FAM71A ATF3 BATF3 PACC1 ENSG00000212187 VASH2
GH01J212481 Enhancer 1.6 FANTOM5 ENCODE dbSUPER 47.9 -13.1 -13052 8.2 ZFX CBFA2T2 ZSCAN21 BACH1 MAFK TRIM24 SP7 ELF1 SP1 KLF14 LINC02771 ATF3 ANGEL2 BATF3 RPL21P28 ENSG00000286213
GH01J212476 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 42.4 -4.9 -4908 1.7 SP1 CC2D1A CTCF ZKSCAN8 ZNF148 ZNF687 ZSCAN21 BACH1 RELA ZNF639 LINC02771 ATF3 NENF FAM71A ENSG00000235862 BATF3 PACC1 RPL21P28 ENSG00000212187 VASH2
GH01J212490 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 40.4 -18.5 -18534 1.3 ZNF148 IKZF1 LINC02771 ATF3 BATF3 ENSG00000286213
GH01J212497 Enhancer 0.7 ENCODE 39.5 -25.5 -25516 1.1 ZNF24 EGR1 IKZF1 SOX13 IKZF2 CEBPA GATAD2A CEBPB ZNF205 FOXA1 LINC02771 ATF3 NENF BATF3 PACC1 ENSG00000286213
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02771 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02771 Gene

Genomic Locations for LINC02771 Gene
chr1:212,466,816-212,472,865
(GRCh38/hg38)
Size:
6,050 bases
Orientation:
Minus strand
chr1:212,640,158-212,641,085
(GRCh37/hg19)
Size:
928 bases
Orientation:
Minus strand

Genomic View for LINC02771 Gene

Genes around LINC02771 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02771 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02771 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02771 Gene

Proteins for LINC02771 Gene

Post-translational modifications for LINC02771 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02771 Gene

Domains & Families for LINC02771 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02771 Gene

Function for LINC02771 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02771 Gene

Localization for LINC02771 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02771 Gene

Pathways & Interactions for LINC02771 Gene

PathCards logo

SuperPathways for LINC02771 Gene

No Data Available

Interacting Proteins for LINC02771 Gene

Gene Ontology (GO) - Biological Process for LINC02771 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02771 Gene

Drugs & Compounds for LINC02771 Gene

No Compound Related Data Available

Transcripts for LINC02771 Gene

mRNA/cDNA for LINC02771 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02771 Gene

No ASD Table

Relevant External Links for LINC02771 Gene

GeneLoc Exon Structure for
LINC02771
ECgene alternative splicing isoforms for
LINC02771

Expression for LINC02771 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02771 Gene

Orthologs for LINC02771 Gene

Evolution for LINC02771 Gene

ENSEMBL:
Gene Tree for LINC02771 (if available)
TreeFam:
Gene Tree for LINC02771 (if available)

No data available for Orthologs for LINC02771 Gene

Paralogs for LINC02771 Gene

No data available for Paralogs for LINC02771 Gene

Variants for LINC02771 Gene

Sequence variations from dbSNP and Humsavar for LINC02771 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000138863 -- 212,474,293(-) T/C upstream_transcript_variant
rs1000140354 -- 212,469,845(-) T/C genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000186930 -- 212,471,398(-) C/T genic_upstream_transcript_variant, intron_variant
rs1000460693 -- 212,467,326(-) C/T intron_variant
rs1001199169 -- 212,468,823(-) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

Additional Variant Information for LINC02771 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02771

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02771 Gene

Disorders for LINC02771 Gene

No disorders were found for LINC02771 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02771 Gene

Publications for LINC02771 Gene

No publications were found for LINC02771 Gene.

No data available for External Links for LINC02771 Gene

Products for LINC02771 Gene

Sources for LINC02771 Gene

Content
Loading form....