LINC02762 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2762

GC11P112271
GIFtS:
10

Aliases for LINC02762 Gene

Subcategory (RNA class) for LINC02762 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02762 Gene

  • Long Intergenic Non-Protein Coding RNA 2762 2 3
  • Novel Transcript 5
  • HSALNG0087194 169
  • NONHSAG009627 94
  • NONHSAG009629 94
  • HSALNG0087199 169
  • AP002884.1 5
  • Lnc-PTS-1 170

External Ids for LINC02762 Gene

Summaries for LINC02762 Gene

GeneCards Summary for LINC02762 Gene

LINC02762 (Long Intergenic Non-Protein Coding RNA 2762) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02762 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02762 Gene

Genomics for LINC02762 Gene

GeneHancer (GH) Regulatory Elements for LINC02762 Gene

Promoters and enhancers for LINC02762 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J112270 Promoter/Enhancer 1 Ensembl ENCODE 793.3 +1.6 1584 0.8 ELF1 L3MBTL2 SMARCA4 TRIM24 ATF1 ZNF316 MTA2 CTBP1 POLR2A FOXK2 LINC02762 lnc-PLET1-2 PTS RPS12P21 RNU6-44P piR-61240-064
GH11J112267 Enhancer 0.9 Ensembl ENCODE dbSUPER 788.3 -1.6 -1632 0.9 SP1 IKZF1 CEBPA RXRA JUND YY1 CEBPB NR2F2 CEBPG HNF4A LINC02762 ST13P10 PLET1 PTS
GH11J112268 Enhancer 0.3 Ensembl dbSUPER 793.7 -0.5 -516 0.2 LINC02762 ST13P10 PTS RPS12P21 RNU6-44P
GH11J112225 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 38.2 -41.0 -40983 5.3 ZBTB40 ZBTB6 POLR2A ATF1 CREB1 MYC NFYC ELF1 HLF L3MBTL2 HSALNG0087184 PTS lnc-PLET1-8 LINC02762 PLET1 ENSG00000255292 SDHD TIMM8B NKAPD1 BCO2
GH11J112289 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 24.1 +22.8 22807 4.8 ZNF24 CTCF GATA3 ZNF217 ZNF362 MYC L3MBTL2 RAD21 ZNF148 ELF3 LINC02762 RNU6-44P ENSG00000255292 TEX12 NKAPD1 PIH1D2 BCO2 lnc-PLET1-2 piR-61240-064
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02762 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02762 Gene

Genomic Locations for LINC02762 Gene
chr11:112,269,217-112,381,495
(GRCh38/hg38)
Size:
112,279 bases
Orientation:
Plus strand
chr11:112,141,472-112,233,257
(GRCh37/hg19)
Size:
91,786 bases
Orientation:
Plus strand

Genomic View for LINC02762 Gene

Genes around LINC02762 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02762 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02762 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02762 Gene

Proteins for LINC02762 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02762 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02762 Gene

Domains & Families for LINC02762 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02762 Gene

Function for LINC02762 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02762 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02762 Gene

Localization for LINC02762 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02762 Gene

Pathways & Interactions for LINC02762 Gene

PathCards logo

SuperPathways for LINC02762 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02762 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02762 Gene

Drugs & Compounds for LINC02762 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02762 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC02762 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(59) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(33) RNACentral transcripts :
(15) LncBook transcripts :
(31) LNCipedia transcripts :
(17) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02762 Gene

No ASD Table

Relevant External Links for LINC02762 Gene

GeneLoc Exon Structure for
LINC02762
ECgene alternative splicing isoforms for
LINC02762

Expression for LINC02762 Gene

Products:

  1. Primer

SOURCE GeneReport for Unigene cluster for LINC02762 Gene:

Hs.651827
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02762 Gene

Orthologs for LINC02762 Gene

Evolution for LINC02762 Gene

ENSEMBL:
Gene Tree for LINC02762 (if available)
TreeFam:
Gene Tree for LINC02762 (if available)

No data available for Orthologs for LINC02762 Gene

Paralogs for LINC02762 Gene

No data available for Paralogs for LINC02762 Gene

Variants for LINC02762 Gene

Sequence variations from dbSNP and Humsavar for LINC02762 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000021494 -- 112,317,258(+) T/G intron_variant
rs1000087361 -- 112,276,093(+) T/C intron_variant
rs1000103678 -- 112,341,392(+) A/G intron_variant
rs1000121498 -- 112,276,477(+) C/A intron_variant
rs1000154833 -- 112,296,860(+) A/T intron_variant

Additional Variant Information for LINC02762 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02762

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02762 Gene

Disorders for LINC02762 Gene

No disorders were found for LINC02762 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02762 Gene

Publications for LINC02762 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LINC02762 Gene

Products for LINC02762 Gene

Sources for LINC02762 Gene