Aliases for LINC02762 Gene

Data sources for LINC02762 Gene:

RNA type for LINC02762 Gene

lncRNA

Aliases for LINC02762 Gene

External Ids for LINC02762 Gene

Summaries for LINC02762 Gene

GeneCards Summary for LINC02762 Gene

LINC02762 (Long Intergenic Non-Protein Coding RNA 2762) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02762 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02762 Gene

Genomics for LINC02762 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02762 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J112270 Promoter/Enhancer 1 Ensembl ENCODE 293.3 +1.6 1585 0.8 NFIC ELF1 TAL1 ZNF316 ETV1 FOXK2 ZEB2 NRF1 TCF12 POLR2A LINC02762 HSALNG0087194 lnc-PLET1-2 PTS RPS12P21 RNU6-44P PLET1 piR-61240-064 NCAM1
GH11J112267 Enhancer 1 Ensembl ENCODE dbSUPER 288.3 -1.6 -1631 0.9 IKZF1 CEBPA YY1 RXRA TEAD3 JUND HNF4A MAX MEIS2 NR2C1 LINC02762 ST13P10 PLET1 PTS NCAM1
GH11J112225 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 38.2 -41.0 -40982 5.3 IKZF1 MYC POLR2A ZNF223 ATF3 ZIC2 YY1 NONO CTCF CEBPB HSALNG0087184 HSALNG0087185 HSALNG0087186 PTS lnc-PLET1-8 LINC02762 PLET1 ENSG00000255292 SDHD TIMM8B
GH11J112289 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 24.1 +22.8 22808 4.8 ZNF207 MYC JUND ATF2 ZNF10 MXD4 NONO CTCF CEBPB REST LINC02762 RNU6-44P ENSG00000255292 TEX12 NKAPD1 PIH1D2 BCO2 HSALNG0087194 lnc-PLET1-2 PLET1
GH11J112253 Enhancer 1.1 Ensembl ENCODE dbSUPER 33.5 -14.4 -14433 3.2 ZNF148 ZNF316 ZBTB5 TARDBP NFE2 HLTF IRF9 CBX1 MAFK HDGF lnc-IL18-2-001 LINC02762 lnc-IL18-2-002 PLET1 PTS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02762 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02762 Gene

Latest Assembly
chr11:112,269,216-112,381,495
(GRCh38/hg38)
Size:
112,280 bases
Orientation:
Plus strand

Previous Assembly
chr11:112,141,472-112,233,257
(GRCh37/hg19 by Entrez Gene)
Size:
91,786 bases
Orientation:
Plus strand

chr11:112,141,472-112,233,257
(GRCh37/hg19 by Ensembl)
Size:
91,786 bases
Orientation:
Plus strand

Genomic View for LINC02762 Gene

Genes around LINC02762 on UCSC Golden Path with GeneCards custom track
LINC02762 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02762 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02762 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02762 Gene

Proteins for LINC02762 Gene

Post-translational modifications for LINC02762 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02762 Gene

Domains & Families for LINC02762 Gene

Gene Families for LINC02762 Gene

genes like me logo Genes that share domains with LINC02762: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02762 Gene

Function for LINC02762 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02762 Gene

Localization for LINC02762 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02762 Gene

Pathways & Interactions for LINC02762 Gene

PathCards logo

SuperPathways for LINC02762 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02762 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02762 Gene

Drugs & Compounds for LINC02762 Gene

No Compound Related Data Available

Transcripts for LINC02762 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02762 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00007D0844_9606 lncRNA 2749 4

RefSeq: NR_126004,

Ensembl: ENST00000504610 (view in UCSC) ,

LNCipedia: lnc-PTS-1:1,

NONCODE: NONHSAT024202.2,

URS00007D213D_9606 lncRNA 599 4

Ensembl: ENST00000527511 (view in UCSC) ,

LncBook: HSALNT0181175,

LNCipedia: lnc-PTS-1:5,

NONCODE: NONHSAT024214.2,

URS00007C9279_9606 lncRNA 699 3

Ensembl: ENST00000532168 (view in UCSC) ,

LncBook: HSALNT0181165,

LNCipedia: lnc-PTS-1:18,

URS0000EF432B_9606 lncRNA 3011 1

Ensembl: ENST00000666993 (view in UCSC) ,

URS0000EEFD9E_9606 lncRNA 2191 1

Ensembl: ENST00000529938 (view in UCSC) ,

LINC02762 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02762 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02762 Gene

No ASD Table

Relevant External Links for LINC02762 Gene

GeneLoc Exon Structure for
LINC02762

Expression for LINC02762 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02762

SOURCE GeneReport for Unigene cluster for LINC02762 Gene:

Hs.651827
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02762 Gene

Orthologs for LINC02762 Gene

Evolution for LINC02762 Gene

ENSEMBL:
Gene Tree for LINC02762 (if available)
TreeFam:
Gene Tree for LINC02762 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02762

No data available for Orthologs for LINC02762 Gene

Paralogs for LINC02762 Gene

No data available for Paralogs for LINC02762 Gene

Variants for LINC02762 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02762 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02762 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02762
Leiden Open Variation Database (LOVD)
LINC02762

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02762 Gene

Disorders for LINC02762 Gene

Additional Disease Information for LINC02762

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02762 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02762 Gene

Publications for LINC02762 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LINC02762 Gene

Products for LINC02762 Gene

Sources for LINC02762 Gene