Aliases for LINC02753 Gene

Data sources for LINC02753 Gene:

RNA type for LINC02753 Gene

lncRNA

Aliases for LINC02753 Gene

External Ids for LINC02753 Gene

Summaries for LINC02753 Gene

GeneCards Summary for LINC02753 Gene

LINC02753 (Long Intergenic Non-Protein Coding RNA 2753) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02753 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02753 Gene

Genomics for LINC02753 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02753 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J070063 Enhancer 0.7 Ensembl ENCODE dbSUPER 261 +0.7 748 3 PRDM10 NCOA3 ZNF24 LINC02753 LOC105369371 lnc-ANO1-2 ANO1 FADD
GH11J070077 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.3 -14.6 -14573 4.4 NFIC ZIC2 REST CTCF RAD21 JUND ZNF664 ZNF687 PKNOX1 MNT ANO1 LINC02753 RNU6-1175P RF00026-180 LINC02584 FADD
GH11J070072 Enhancer 0.9 Ensembl ENCODE dbSUPER 10.6 -8.4 -8355 1.8 BCL11A ATF2 JUNB SP7 ZBED1 NANOG EGR2 CREM EED RUNX3 RNU6-1175P RF00026-180 LINC02753 ANO1 HSALNG0085407 lnc-ANO1-2 LINC02584 FADD
GH11J070082 Enhancer 0.6 dbSUPER 9.5 -19.5 -19463 4.6 YY1 REST CTCF RXRA RAD21 HNF4A MAX SP1 SMC3 SP5 LINC02584 ANO1-AS1 LINC02753 ANO1 RF00026-180 RNU6-1175P FADD
GH11J070087 Enhancer 0.5 Ensembl 9.2 -22.5 -22486 0.5 REST SMC3 ZNF316 CTCF RAD21 ZNF24 ANO1-AS1 LINC02753 LINC02584 ENSG00000255143 ANO1 FADD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02753 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02753 Gene

Latest Assembly
chr11:70,056,229-70,065,372
(GRCh38/hg38)
Size:
9,144 bases
Orientation:
Minus strand

Previous Assembly
chr11:69,902,336-69,911,477
(GRCh37/hg19 by Entrez Gene)
Size:
9,142 bases
Orientation:
Minus strand

chr11:69,902,336-69,911,477
(GRCh37/hg19 by Ensembl)
Size:
9,142 bases
Orientation:
Minus strand

Genomic View for LINC02753 Gene

Genes around LINC02753 on UCSC Golden Path with GeneCards custom track
LINC02753 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02753 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02753 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02753 Gene

Proteins for LINC02753 Gene

Post-translational modifications for LINC02753 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02753 Gene

Domains & Families for LINC02753 Gene

Gene Families for LINC02753 Gene

genes like me logo Genes that share domains with LINC02753: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02753 Gene

Function for LINC02753 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02753 Gene

Localization for LINC02753 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02753 Gene

Pathways & Interactions for LINC02753 Gene

PathCards logo

SuperPathways for LINC02753 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02753 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02753 Gene

Drugs & Compounds for LINC02753 Gene

No Compound Related Data Available

Transcripts for LINC02753 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02753 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000559024_9606 lncRNA 550 5

RefSeq: NR_120530,

Ensembl: ENST00000528316 (view in UCSC) ,

LncBook: HSALNT0177699,

LNCipedia: lnc-FGF3-2:3,

NONCODE: NONHSAT022625.2,

URS00000AE395_9606 lncRNA 1755 4

Ensembl: ENST00000511013 (view in UCSC) ,

LncBook: HSALNT0177700,

LNCipedia: lnc-FGF3-2:1,

NONCODE: NONHSAT022626.2,

URS000075C6A9_9606 lncRNA 1755 1

RefSeq: NR_120529,

URS00009C1C0B_9606 lncRNA 1995 2

LncBook: HSALNT0177701,

NONCODE: NONHSAT160480.1,

URS0001BF2616_9606 lncRNA 1995 1

LncBook: HSALNT0177701,

LINC02753 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02753 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02753 Gene

No ASD Table

Relevant External Links for LINC02753 Gene

GeneLoc Exon Structure for
LINC02753

Expression for LINC02753 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02753

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02753 Gene

Orthologs for LINC02753 Gene

Evolution for LINC02753 Gene

ENSEMBL:
Gene Tree for LINC02753 (if available)
TreeFam:
Gene Tree for LINC02753 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02753

No data available for Orthologs for LINC02753 Gene

Paralogs for LINC02753 Gene

No data available for Paralogs for LINC02753 Gene

Variants for LINC02753 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02753 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02753 Gene

Variant ID Type Subtype PubMed ID
esv2678802 CNV deletion 23128226
esv3626759 CNV loss 21293372

Additional Variant Information for LINC02753 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02753
Leiden Open Variation Database (LOVD)
LINC02753

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02753 Gene

Disorders for LINC02753 Gene

Additional Disease Information for LINC02753

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02753 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02753 Gene

Publications for LINC02753 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02753 Gene

Products for LINC02753 Gene

Sources for LINC02753 Gene