Aliases for LINC02749 Gene

Subcategory (RNA class) for LINC02749 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02749 Gene

  • Long Intergenic Non-Protein Coding RNA 2749 2 3 5
  • Lnc-SSU72P5-2 168
  • NONHSAG007487 92
  • HSALNG0082346 167
  • LINC02749 2

External Ids for LINC02749 Gene

Summaries for LINC02749 Gene

GeneCards Summary for LINC02749 Gene

LINC02749 (Long Intergenic Non-Protein Coding RNA 2749) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02749 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02749 Gene

Genomics for LINC02749 Gene

GeneHancer (GH) Regulatory Elements for LINC02749 Gene

Promoters and enhancers for LINC02749 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J004093 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 4.8 -84.7 -84663 3.5 RXRA ZBTB40 ZNF217 EP300 SIN3A NRF1 TCF12 MYC POLR2G SP1 RRM1 piR-40176-005 LINC02749 STIM1
GH11J004145 Enhancer 0.9 Ensembl ENCODE 4.8 -33.4 -33387 1.4 ZBTB11 REST MYC CTBP1 MYNN ZNF592 MNT NR2F1 NCOA2 EP400 OR52K2 RRM1 LINC02749 OR55B1P RRM1-AS1
GH11J004134 Enhancer 0.7 Ensembl ENCODE 4.8 -44.1 -44099 2.2 TCF12 FOXA2 FOS TCF7L2 GATA2 YY1 JUN FOXA1 SP1 piR-31432-065 piR-53431-066 piR-46662-067 piR-61028-065 RRM1 LINC02749 piR-40176-005
GH11J004186 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 0.4 +7.9 7892 1.8 CTCF PHF8 ZFX ZNF10 AFF1 ZBTB26 REST KLF7 MYC RAD21 RRM1 piR-31027 LINC02749 lnc-SSU72P2-3
GH11J004182 Enhancer 0.7 ENCODE 0.7 +2.7 2677 0.1 CTCF REST MYC RAD21 CTBP1 SMC3 DEK NEUROD1 MAX ZNF592 OR52K3P OR52K1 LINC02749 piR-31027 lnc-SSU72P2-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02749 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02749 Gene

Genomic Locations for LINC02749 Gene
chr11:4,179,599-4,204,965
(GRCh38/hg38)
Size:
25,367 bases
Orientation:
Plus strand
chr11:4,208,370-4,223,885
(GRCh37/hg19)
Size:
15,516 bases
Orientation:
Plus strand

Genomic View for LINC02749 Gene

Genes around LINC02749 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02749 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02749 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02749 Gene

Proteins for LINC02749 Gene

Post-translational modifications for LINC02749 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02749 Gene

Domains & Families for LINC02749 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02749 Gene

Function for LINC02749 Gene

Phenotypes From GWAS Catalog for LINC02749 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02749 Gene

Localization for LINC02749 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02749 Gene

Pathways & Interactions for LINC02749 Gene

PathCards logo

SuperPathways for LINC02749 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02749 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02749 Gene

Drugs & Compounds for LINC02749 Gene

No Compound Related Data Available

Transcripts for LINC02749 Gene

mRNA/cDNA for LINC02749 Gene

9 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
3 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02749 Gene

No ASD Table

Relevant External Links for LINC02749 Gene

GeneLoc Exon Structure for
LINC02749

Expression for LINC02749 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02749 Gene

Orthologs for LINC02749 Gene

Evolution for LINC02749 Gene

ENSEMBL:
Gene Tree for LINC02749 (if available)
TreeFam:
Gene Tree for LINC02749 (if available)

No data available for Orthologs for LINC02749 Gene

Paralogs for LINC02749 Gene

No data available for Paralogs for LINC02749 Gene

Variants for LINC02749 Gene

Additional dbSNP identifiers (rs#s) for LINC02749 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02749 Gene

Variant ID Type Subtype PubMed ID
esv2759797 CNV gain+loss 17122850
esv34983 CNV gain 17911159
esv3578116 CNV gain 25503493
esv3625165 CNV gain 21293372
nsv1053189 CNV gain 25217958
nsv1053482 CNV gain 25217958
nsv1070428 CNV deletion 25765185
nsv1159794 CNV deletion 26073780
nsv428248 CNV gain+loss 18775914
nsv467662 CNV loss 19166990
nsv467663 CNV loss 19166990
nsv469627 CNV gain+loss 16826518
nsv469932 CNV loss 18288195
nsv471670 CNV gain+loss 15918152
nsv553151 CNV loss 21841781
nsv553152 CNV loss 21841781
nsv818795 CNV gain 17921354
nsv832053 CNV gain 17160897
nsv8777 CNV gain+loss 18304495

Additional Variant Information for LINC02749 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02749

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02749 Gene

Disorders for LINC02749 Gene

No disorders were found for LINC02749 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02749 Gene

Publications for LINC02749 Gene

No publications were found for LINC02749 Gene.

No data available for Mastermind for LINC02749 Gene

Products for LINC02749 Gene

Sources for LINC02749 Gene