Aliases for LINC02747 Gene

Data sources for LINC02747 Gene:

RNA type for LINC02747 Gene

lncRNA

Aliases for LINC02747 Gene

External Ids for LINC02747 Gene

Summaries for LINC02747 Gene

GeneCards Summary for LINC02747 Gene

LINC02747 (Long Intergenic Non-Protein Coding RNA 2747) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02747 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02747 Gene

Genomics for LINC02747 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02747 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J069478 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 0.7 +3.1 3079 3.3 MCM7 ZBTB7B ZNF217 HES1 MBD2 CTBP1 RXRA ZNF511 SAP130 NONO LINC01488 HSALNG0085349 LINC02747 LOC102724265 CCND1
GH11J069465 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +14.2 14190 7.6 ZIC2 NFIC YY1 HES1 MAFF RXRA SMAD4 SAP130 ETV4 RARA ENSG00000261347 HSALNG0085346 HSALNG0085347 LINC02747 LOC102724265 CCND1
GH11J069474 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +7.0 7024 4 RFX1 POU5F1 ATF1 HSALNG0085349 LINC01488 LINC02747 LOC102724265 CCND1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02747 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02747 Gene

Latest Assembly
chr11:69,468,344-69,483,212
(GRCh38/hg38)
Size:
14,869 bases
Orientation:
Minus strand

Previous Assembly
chr11:69,291,901-69,294,708
(GRCh37/hg19 by Ensembl)
Size:
2,808 bases
Orientation:
Minus strand

Genomic View for LINC02747 Gene

Genes around LINC02747 on UCSC Golden Path with GeneCards custom track
LINC02747 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02747 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02747 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02747 Gene

Proteins for LINC02747 Gene

Post-translational modifications for LINC02747 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02747 Gene

Domains & Families for LINC02747 Gene

Gene Families for LINC02747 Gene

genes like me logo Genes that share domains with LINC02747: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02747 Gene

Function for LINC02747 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02747 Gene

Localization for LINC02747 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02747 Gene

Pathways & Interactions for LINC02747 Gene

PathCards logo

SuperPathways for LINC02747 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02747 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02747 Gene

Drugs & Compounds for LINC02747 Gene

No Compound Related Data Available

Transcripts for LINC02747 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02747 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00003B501D_9606 lncRNA 728 3

Ensembl: ENST00000542064 (view in UCSC) ,

LNCipedia: lnc-ORAOV1-1:1,

NONCODE: NONHSAT022607.2,

URS0000D61514_9606 lncRNA 2169 2

Ensembl: ENST00000645449 (view in UCSC) ,

LNCipedia: lnc-ORAOV1-1:5,

URS00008BC154_9606 lncRNA 1104 2

LNCipedia: lnc-ORAOV1-1:4,

NONCODE: NONHSAT022606.2,

URS00009B7C35_9606 lncRNA 726 2

LncBook: HSALNT0177617,

NONCODE: NONHSAT160473.1,

URS0001BD2143_9606 lncRNA 1507 1

LncBook: HSALNT0177616,

LINC02747 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02747 Gene

No ASD Table

Relevant External Links for LINC02747 Gene

GeneLoc Exon Structure for
LINC02747

No data available for mRNA/cDNA for LINC02747 Gene

Expression for LINC02747 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02747 Gene

Orthologs for LINC02747 Gene

Evolution for LINC02747 Gene

ENSEMBL:
Gene Tree for LINC02747 (if available)
TreeFam:
Gene Tree for LINC02747 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02747

No data available for Orthologs for LINC02747 Gene

Paralogs for LINC02747 Gene

No data available for Paralogs for LINC02747 Gene

Variants for LINC02747 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02747 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02747 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02747
Leiden Open Variation Database (LOVD)
LINC02747

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02747 Gene

Disorders for LINC02747 Gene

Additional Disease Information for LINC02747

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02747 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02747 Gene

Publications for LINC02747 Gene

  1. Long Noncoding RNAs CUPID1 and CUPID2 Mediate Breast Cancer Risk at 11q13 by Modulating the Response to DNA Damage. (PMID: 28777932) Betts JA … French JD (American journal of human genetics 2017) 3

No data available for Mastermind for LINC02747 Gene

Products for LINC02747 Gene

Sources for LINC02747 Gene