Aliases for LINC02743 Gene

Data sources for LINC02743 Gene:

Subcategory (RNA class) for LINC02743 Gene

lncRNA

Aliases for LINC02743 Gene

External Ids for LINC02743 Gene

Previous GeneCards Identifiers for LINC02743 Gene

  • GC11M133784

Summaries for LINC02743 Gene

GeneCards Summary for LINC02743 Gene

LINC02743 (Long Intergenic Non-Protein Coding RNA 2743) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02743 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02743 Gene

Genomics for LINC02743 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02743 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J133809 Promoter/Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.4 +9.6 9643 1.6 CTCF CHD2 LINC02743 HSALNG0088337 SPATA19 OPCML
GH11J133821 Enhancer 0.5 ENCODE 0.7 -2.3 -2259 0.2 CTCF SMC3 RAD21 MYC MAX ZNF143 ZNF654 LINC02743 SPATA19 OPCML
GH11J133835 Enhancer 0.7 Ensembl ENCODE 0.4 -15.7 -15663 0.8 CTCF REST IRF4 SMC3 RAD21 THRB BATF MYC MAX RXRB SPATA19 LINC02743 OPCML
GH11J133831 Enhancer 0.4 Ensembl 0.4 -11.7 -11679 0.2 CTCF RAD21 ZNF143 LINC02743 SPATA19 OPCML
GH11J133787 Promoter 0.4 CraniofacialAtlas 0.3 +32.0 32016 0.2 POLR2A HSALNG0088337 piR-58297-094 LINC02743 SPATA19 OPCML
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02743 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02743 Gene

Latest Assembly
chr11:133,636,417-133,819,622
(GRCh38/hg38)
Size:
183,206 bases
Orientation:
Minus strand

Previous Assembly
chr11:133,653,566-133,680,271
(GRCh37/hg19 by Entrez Gene)
Size:
26,706 bases
Orientation:
Minus strand

chr11:133,653,566-133,680,271
(GRCh37/hg19 by Ensembl)
Size:
26,706 bases
Orientation:
Minus strand

Genomic View for LINC02743 Gene

Genes around LINC02743 on UCSC Golden Path with GeneCards custom track
LINC02743 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02743 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02743 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02743 Gene

Proteins for LINC02743 Gene

Post-translational modifications for LINC02743 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02743 Gene

Domains & Families for LINC02743 Gene

Gene Families for LINC02743 Gene

genes like me logo Genes that share domains with LINC02743: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02743 Gene

Function for LINC02743 Gene

Phenotypes From GWAS Catalog for LINC02743 Gene

Phenotypes for LINC02743 Gene

genes like me logo Genes that share phenotypes with LINC02743: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02743 Gene

Localization for LINC02743 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02743 Gene

Pathways & Interactions for LINC02743 Gene

PathCards logo

SuperPathways for LINC02743 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02743 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02743 Gene

Drugs & Compounds for LINC02743 Gene

No Compound Related Data Available

Transcripts for LINC02743 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02743 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000154C35_9606 lncRNA 978 4

Ensembl: ENST00000526254 (view in UCSC) ,

LncBook: HSALNT0183754,

LNCipedia: lnc-SPATA19-9:4,

NONCODE: NONHSAT025212.2,

URS00008B71B7_9606 lncRNA 2828 3

LncBook: HSALNT0183758,

LNCipedia: lnc-SPATA19-9:3,

NONCODE: NONHSAT025214.2,

URS00008BE9BC_9606 lncRNA 948 3

LncBook: HSALNT0183755,

LNCipedia: lnc-SPATA19-9:6,

NONCODE: NONHSAT025213.2,

URS00008B6102_9606 lncRNA 579 3

LncBook: HSALNT0183759,

LNCipedia: lnc-SPATA19-9:2,

NONCODE: NONHSAT025215.2,

URS00008B5882_9606 lncRNA 314 3

LncBook: HSALNT0183749,

LNCipedia: lnc-SPATA19-9:5,

NONCODE: NONHSAT025211.2,

LINC02743 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02743 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02743 Gene

No ASD Table

Relevant External Links for LINC02743 Gene

GeneLoc Exon Structure for
LINC02743

Expression for LINC02743 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02743

SOURCE GeneReport for Unigene cluster for LINC02743 Gene:

Hs.560000
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02743 Gene

Orthologs for LINC02743 Gene

Evolution for LINC02743 Gene

ENSEMBL:
Gene Tree for LINC02743 (if available)
TreeFam:
Gene Tree for LINC02743 (if available)

No data available for Orthologs for LINC02743 Gene

Paralogs for LINC02743 Gene

No data available for Paralogs for LINC02743 Gene

Variants for LINC02743 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02743 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02743 Gene

Variant ID Type Subtype PubMed ID
esv3628157 CNV gain 21293372
esv3628158 CNV gain 21293372
nsv1046273 CNV gain 25217958
nsv473667 CNV novel sequence insertion 20440878

Additional Variant Information for LINC02743 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02743

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02743 Gene

Disorders for LINC02743 Gene

No disorders were found for LINC02743 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02743 Gene

Publications for LINC02743 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02743 Gene

Products for LINC02743 Gene

Sources for LINC02743 Gene