Aliases for LINC02740 Gene

Subcategory (RNA class) for LINC02740 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02740 Gene

  • Long Intergenic Non-Protein Coding RNA 2740 2 3 5
  • LINC02740 2 5
  • NONHSAG008108.2 91
  • CTD-2572N17.1 3
  • HSALNG0083786 164
  • Lnc-LRRC4C-3 165

External Ids for LINC02740 Gene

Summaries for LINC02740 Gene

GeneCards Summary for LINC02740 Gene

LINC02740 (Long Intergenic Non-Protein Coding RNA 2740) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02740 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02740 Gene

Genomics for LINC02740 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02740 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J042253 Enhancer 0.3 Ensembl 600.7 +0.3 320 0.8 SPI1 LINC02740 LOC105376642 lnc-API5-2 LINC02745 LRRC4C
GH11J042237 Enhancer 0.5 Ensembl ENCODE 0.4 +15.5 15463 1.9 FOS GATA3 LINC02740 LINC02745 LRRC4C
GH11J042239 Enhancer 0.4 ENCODE 0.4 +14.4 14415 0.2 FOXA1 POLR2A FOS GATA3 LINC02740 LINC02745 LRRC4C
GH11J042243 Enhancer 0.3 Ensembl 0.4 +9.8 9820 1.8 TEAD4 LINC02740 LINC02745 LRRC4C
GH11J042234 Enhancer 0.3 Ensembl 0.4 +19.0 19020 1.8 NANOG LINC02740 LINC02745 LRRC4C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02740 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02740 Gene

Genomic Locations for LINC02740 Gene
chr11:42,177,054-42,253,721
(GRCh38/hg38)
Size:
76,668 bases
Orientation:
Minus strand
chr11:42,204,842-42,275,262
(GRCh37/hg19)
Size:
70,421 bases
Orientation:
Minus strand

Genomic View for LINC02740 Gene

Genes around LINC02740 on UCSC Golden Path with GeneCards custom track
LINC02740 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02740 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02740 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02740 Gene

Proteins for LINC02740 Gene

Post-translational modifications for LINC02740 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02740 Gene

Domains & Families for LINC02740 Gene

Gene Families for LINC02740 Gene

genes like me logo Genes that share domains with LINC02740: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02740 Gene

Function for LINC02740 Gene

Phenotypes From GWAS Catalog for LINC02740 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02740 Gene

Localization for LINC02740 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02740 Gene

Pathways & Interactions for LINC02740 Gene

PathCards logo

SuperPathways for LINC02740 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02740 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02740 Gene

Drugs & Compounds for LINC02740 Gene

No Compound Related Data Available

Transcripts for LINC02740 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02740 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000759BCA_9606 lncRNA 479 5

HGNC: 54257,

RefSeq: NR_038309,

LncBook: HSALNT0174478,

LNCipedia: lnc-LRRC4C-3:4,

NONCODE: NONHSAT018912.2,

URS00002E1E70_9606 lncRNA 462 4

Ensembl: ENST00000530387 (view in UCSC) ,

LncBook: HSALNT0174477,

LNCipedia: lnc-LRRC4C-3:3,

NONCODE: NONHSAT018911.2,

URS0000405F3D_9606 lncRNA 447 4

Ensembl: ENST00000525641 (view in UCSC) ,

LncBook: HSALNT0174475,

LNCipedia: lnc-LRRC4C-3:2,

NONCODE: NONHSAT018910.2,

URS0000EF45E2_9606 lncRNA 855 1

Ensembl: ENST00000657748 (view in UCSC) ,

URS0000EEE8FF_9606 lncRNA 782 1

Ensembl: ENST00000658612 (view in UCSC) ,

LINC02740 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02740 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02740 Gene

No ASD Table

Relevant External Links for LINC02740 Gene

GeneLoc Exon Structure for
LINC02740

Expression for LINC02740 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02740

SOURCE GeneReport for Unigene cluster for LINC02740 Gene:

Hs.99310
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02740 Gene

Orthologs for LINC02740 Gene

Evolution for LINC02740 Gene

ENSEMBL:
Gene Tree for LINC02740 (if available)
TreeFam:
Gene Tree for LINC02740 (if available)

No data available for Orthologs for LINC02740 Gene

Paralogs for LINC02740 Gene

No data available for Paralogs for LINC02740 Gene

Variants for LINC02740 Gene

Additional dbSNP identifiers (rs#s) for LINC02740 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02740 Gene

Variant ID Type Subtype PubMed ID
esv2670858 CNV deletion 23128226
esv3626105 CNV loss 21293372
esv3626106 CNV loss 21293372
esv9187 CNV loss 19470904
nsv477640 CNV novel sequence insertion 20440878
nsv519751 CNV loss 19592680
nsv7749 CNV insertion 18451855
nsv832132 CNV loss 17160897

Additional Variant Information for LINC02740 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02740

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02740 Gene

Disorders for LINC02740 Gene

Additional Disease Information for LINC02740

No disorders were found for LINC02740 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02740 Gene

Publications for LINC02740 Gene

  1. Copy number variation associated with meiotic arrest in idiopathic male infertility. (PMID: 25439847) Eggers S … O'Bryan MK (Fertility and sterility 2015) 3

No data available for Mastermind for LINC02740 Gene

Products for LINC02740 Gene

Sources for LINC02740 Gene