Aliases for LINC02735 Gene

Subcategory (RNA class) for LINC02735 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02735 Gene

  • Long Intergenic Non-Protein Coding RNA 2735 2 3
  • Novel Transcript 5
  • NONHSAG008344 94
  • HSALNG0084226 169
  • Lnc-OR5AK2-1 170
  • AP001803.2 5

External Ids for LINC02735 Gene

Summaries for LINC02735 Gene

GeneCards Summary for LINC02735 Gene

LINC02735 (Long Intergenic Non-Protein Coding RNA 2735) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02735 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02735 Gene

Genomics for LINC02735 Gene

GeneHancer (GH) Regulatory Elements for LINC02735 Gene

Promoters and enhancers for LINC02735 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J056846 Enhancer 0.2 Ensembl 750.6 -1.3 -1269 1.2 LINC02735 piR-35564-022
GH11J056850 Enhancer 0.2 Ensembl 750.6 +1.4 1431 0.2 LINC02735 APLNR piR-56186-010
GH11J056884 Enhancer 0.7 Ensembl ENCODE 0.3 +37.2 37207 1.8 MAFK CEBPA ZNF316 MAFG TFAP4 MAFF HDAC2 OR5G5P ENSG00000274150 piR-56186-010 LINC02735
GH11J056886 Enhancer 0.6 Ensembl ENCODE 0.3 +38.2 38213 0.2 MAFK CEBPA ZNF316 MAFG MAFF ENSG00000274150 piR-56186-010 LINC02735
GH11J056910 Enhancer 0.8 FANTOM5 Ensembl 0.2 +62.4 62431 1.8 SIN3A ZBTB33 MAFK ELF1 REST ATF3 SP1 SIX5 FOSL2 piR-48325-016 SMTNL1 ENSG00000274150 piR-44198-003 LOC105369310 LINC02735
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02735 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02735 Gene

Genomic Locations for LINC02735 Gene
chr11:56,848,470-56,923,774
(GRCh38/hg38)
Size:
75,305 bases
Orientation:
Plus strand
chr11:56,615,954-56,645,554
(GRCh37/hg19)
Size:
29,601 bases
Orientation:
Plus strand

Genomic View for LINC02735 Gene

Genes around LINC02735 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02735 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02735 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02735 Gene

Proteins for LINC02735 Gene

Post-translational modifications for LINC02735 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02735 Gene

Domains & Families for LINC02735 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02735 Gene

Function for LINC02735 Gene

Phenotypes From GWAS Catalog for LINC02735 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02735 Gene

Localization for LINC02735 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02735 Gene

Pathways & Interactions for LINC02735 Gene

PathCards logo

SuperPathways for LINC02735 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02735 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02735 Gene

Drugs & Compounds for LINC02735 Gene

No Compound Related Data Available

Transcripts for LINC02735 Gene

mRNA/cDNA for LINC02735 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(8) RNACentral transcripts :
(7) LNCipedia transcripts :
(3) NONCODE transcripts :
(4) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02735 Gene

No ASD Table

Relevant External Links for LINC02735 Gene

GeneLoc Exon Structure for
LINC02735
ECgene alternative splicing isoforms for
LINC02735

Expression for LINC02735 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02735 Gene

Orthologs for LINC02735 Gene

Evolution for LINC02735 Gene

ENSEMBL:
Gene Tree for LINC02735 (if available)
TreeFam:
Gene Tree for LINC02735 (if available)

No data available for Orthologs for LINC02735 Gene

Paralogs for LINC02735 Gene

No data available for Paralogs for LINC02735 Gene

Variants for LINC02735 Gene

Sequence variations from dbSNP and Humsavar for LINC02735 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000030245 -- 56,852,240(+) C/A/T intron_variant
rs1000062266 -- 56,850,008(+) G/A intron_variant
rs1000166430 -- 56,868,823(+) G/A intron_variant
rs1000261336 -- 56,846,617(+) A/C upstream_transcript_variant
rs1000275243 -- 56,865,889(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02735 Gene

Variant ID Type Subtype PubMed ID
esv2664352 CNV deletion 23128226
esv3626499 CNV loss 21293372
esv5859 CNV loss 19470904
nsv468577 CNV gain 19166990
nsv469960 CNV gain 18288195
nsv482981 CNV gain 15286789
nsv555101 CNV gain 21841781
nsv819794 CNV loss 19587683
nsv8830 CNV gain 18304495

Additional Variant Information for LINC02735 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02735

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02735 Gene

Disorders for LINC02735 Gene

No disorders were found for LINC02735 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02735 Gene

Publications for LINC02735 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LINC02735 Gene

Products for LINC02735 Gene

Sources for LINC02735 Gene