Aliases for LINC02733 Gene

Subcategory (RNA class) for LINC02733 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC02733 Gene

  • Long Intergenic Non-Protein Coding RNA 2733 2 3
  • Novel Transcript 5
  • NONHSAG008503 94
  • HSALNG0084581 169
  • AP003733.3 5
  • Lnc-FTH1-2 170

External Ids for LINC02733 Gene

Summaries for LINC02733 Gene

GeneCards Summary for LINC02733 Gene

LINC02733 (Long Intergenic Non-Protein Coding RNA 2733) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02733 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02733 Gene

Genomics for LINC02733 Gene

GeneHancer (GH) Regulatory Elements for LINC02733 Gene

Promoters and enhancers for LINC02733 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J062081 Promoter/Enhancer 1.2 Ensembl ENCODE 750.6 +0.4 434 0.7 FOXK2 ZBTB40 CTCF RBPJ USF2 MYC CC2D1A L3MBTL2 MAX DACH1 LINC02733 BEST1 RAB3IL1 FADS3 FTH1 FADS1 piR-57194
GH11J062053 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +28.6 28646 2.6 CTCF CC2D1A HLF L3MBTL2 RAD21 TEAD4 ELF3 MLLT1 TFE3 CBFA2T2 INCENP ENSG00000267811 BEST1 FTH1 RAB3IL1 FADS3 FADS1 ENSG00000269176 ENSG00000244176 SCGB2A1
GH11J062104 Enhancer 1 FANTOM5 ENCODE 0.3 -23.0 -23048 2.5 ZBTB40 L3MBTL2 SP1 BACH1 NCOA6 SMARCA4 TRIM24 IKZF1 RFX1 ZNF740 INCENP FTH1 RAB3IL1 FADS3 HNRNPUL2 BEST1 TTC9C FADS1 CPSF7 MYRF
GH11J062112 Promoter/Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas 0.3 -30.3 -30281 1.1 POLR2A MLLT1 KAT8 NRF1 MXI1 ZNF792 DRAP1 CEBPG ZGPAT CEBPB INCENP TMEM216 FADS3 FADS2 RAB3IL1 piR-38351-078 LINC02733
GH11J062108 Enhancer 0.9 Ensembl ENCODE 0.3 -26.5 -26518 2.2 CTCF MYC HLF RAD21 TEAD4 CBFA2T2 MLLT1 REST TRIM22 HDAC1 INCENP RAB3IL1 FADS3 BEST1 FTH1 FADS1 MYRF MYRF-AS1 piR-38351-078 LINC02733
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02733 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02733 Gene

Genomic Locations for LINC02733 Gene
chr11:62,049,863-62,082,393
(GRCh38/hg38)
Size:
32,531 bases
Orientation:
Minus strand
chr11:61,844,749-61,849,656
(GRCh37/hg19)
Size:
4,908 bases
Orientation:
Minus strand

Genomic View for LINC02733 Gene

Genes around LINC02733 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02733 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02733 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02733 Gene

Proteins for LINC02733 Gene

Post-translational modifications for LINC02733 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02733 Gene

Domains & Families for LINC02733 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02733 Gene

Function for LINC02733 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02733 Gene

Localization for LINC02733 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02733 Gene

Pathways & Interactions for LINC02733 Gene

PathCards logo

SuperPathways for LINC02733 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02733 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02733 Gene

Drugs & Compounds for LINC02733 Gene

No Compound Related Data Available

Transcripts for LINC02733 Gene

mRNA/cDNA for LINC02733 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(2) NONCODE transcripts :
(1) LNCipedia transcripts :
(1) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02733 Gene

No ASD Table

Relevant External Links for LINC02733 Gene

GeneLoc Exon Structure for
LINC02733
ECgene alternative splicing isoforms for
LINC02733

Expression for LINC02733 Gene

SOURCE GeneReport for Unigene cluster for LINC02733 Gene:

Hs.128709
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02733 Gene

Orthologs for LINC02733 Gene

Evolution for LINC02733 Gene

ENSEMBL:
Gene Tree for LINC02733 (if available)
TreeFam:
Gene Tree for LINC02733 (if available)

No data available for Orthologs for LINC02733 Gene

Paralogs for LINC02733 Gene

No data available for Paralogs for LINC02733 Gene

Variants for LINC02733 Gene

Sequence variations from dbSNP and Humsavar for LINC02733 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000057121 -- 62,076,877(-) C/T downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000063980 -- 62,061,861(-) T/A genic_downstream_transcript_variant, intron_variant
rs1000129087 -- 62,063,438(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000236457 -- 62,061,304(-) T/C/G genic_downstream_transcript_variant, intron_variant
rs1000314210 -- 62,067,102(-) C/A/T genic_downstream_transcript_variant, intron_variant

Additional Variant Information for LINC02733 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02733

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02733 Gene

Disorders for LINC02733 Gene

No disorders were found for LINC02733 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02733 Gene

Publications for LINC02733 Gene

No publications were found for LINC02733 Gene.

No data available for External Links for LINC02733 Gene

Products for LINC02733 Gene

Sources for LINC02733 Gene