Aliases for LINC02731 Gene

Data sources for LINC02731 Gene:

Subcategory (RNA class) for LINC02731 Gene

lncRNA

Aliases for LINC02731 Gene

External Ids for LINC02731 Gene

Summaries for LINC02731 Gene

GeneCards Summary for LINC02731 Gene

LINC02731 (Long Intergenic Non-Protein Coding RNA 2731) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02731 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02731 Gene

Genomics for LINC02731 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02731 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J134252 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 12.5 +221.1 221085 3.4 CHD2 TBP ZBTB10 SP1 MXD4 SIX5 NR2C1 MNT SMAD5 ETS1 ACAD8 THYN1 HSALNG0088371 lnc-NCAPD3-3 OPCML GLB1L3 B3GAT1 LINC02731 GLB1L2 NCAPD3
GH11J134032 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 8.9 +4.0 4036 8 MCM7 ZIC2 SIN3A ZNF521 VEZF1 ZNF341 GABPA GABPB1 KLF9 SP2 ENSG00000254648 IGSF9B JAM3 GLB1L3 LINC02731
GH11J134639 Enhancer 0.8 Ensembl ENCODE dbSUPER 10.7 +607.7 607684 3 CTCF NCOA3 KLF1 ESRRA EP300 FOS ZNF157 LOC105369583 lnc-GLB1L2-6 LINC02731 HSALNG0088402 HSALNG0088401 B3GAT1
GH11J134028 Enhancer 0.9 ENCODE CraniofacialAtlas dbSUPER 6.8 -5.4 -5410 0.6 ZIC2 SIN3A RFX5 RFX1 EGR2 PATZ1 POLR2A GLIS2 ZBTB20 ZFHX2 LINC02731 HSALNG0088355 LINC02730 JAM3 IGSF9B
GH11J134003 Enhancer 0.9 FANTOM5 Ensembl ENCODE dbSUPER 5.4 -27.7 -27728 1.8 ATF2 CREB1 ATF7 piR-30449-033 LINC02731 B3GAT1 LINC02730 IGSF9B JAM3 lnc-JAM3-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02731 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02731 Gene

Latest Assembly
chr11:134,032,216-134,067,936
(GRCh38/hg38)
Size:
35,721 bases
Orientation:
Plus strand

Previous Assembly
chr11:133,902,167-133,911,236
(GRCh37/hg19 by Entrez Gene)
Size:
9,070 bases
Orientation:
Plus strand

chr11:133,902,167-133,916,744
(GRCh37/hg19 by Ensembl)
Size:
14,578 bases
Orientation:
Plus strand

Genomic View for LINC02731 Gene

Genes around LINC02731 on UCSC Golden Path with GeneCards custom track
LINC02731 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02731 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02731 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02731 Gene

Proteins for LINC02731 Gene

Post-translational modifications for LINC02731 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02731 Gene

Domains & Families for LINC02731 Gene

Gene Families for LINC02731 Gene

genes like me logo Genes that share domains with LINC02731: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02731 Gene

Function for LINC02731 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02731 Gene

Localization for LINC02731 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02731 Gene

Pathways & Interactions for LINC02731 Gene

PathCards logo

SuperPathways for LINC02731 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02731 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02731 Gene

Drugs & Compounds for LINC02731 Gene

No Compound Related Data Available

Transcripts for LINC02731 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02731 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001A012B_9606 lncRNA 1761 4

Ensembl: ENST00000532327 (view in UCSC) ,

LncBook: HSALNT0183793,

LNCipedia: lnc-JAM3-3:9,

NONCODE: NONHSAT025232.2,

URS0000290A91_9606 lncRNA 1673 4

Ensembl: ENST00000529070 (view in UCSC) ,

LncBook: HSALNT0183788,

LNCipedia: lnc-JAM3-3:4,

NONCODE: NONHSAT025225.2,

URS0000501512_9606 lncRNA 594 4

Ensembl: ENST00000527712 (view in UCSC) ,

LncBook: HSALNT0183791,

LNCipedia: lnc-JAM3-3:6,

NONCODE: NONHSAT025228.2,

URS0000124B26_9606 lncRNA 713 3

Ensembl: ENST00000531938 (view in UCSC) ,

LNCipedia: lnc-JAM3-3:7,

NONCODE: NONHSAT025230.2,

URS0000205886_9606 lncRNA 573 3

Ensembl: ENST00000533091 (view in UCSC) ,

LncBook: HSALNT0183789,

LNCipedia: lnc-JAM3-3:5,

LINC02731 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02731 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02731 Gene

No ASD Table

Relevant External Links for LINC02731 Gene

GeneLoc Exon Structure for
LINC02731

Expression for LINC02731 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02731

SOURCE GeneReport for Unigene cluster for LINC02731 Gene:

Hs.423734
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02731 Gene

Orthologs for LINC02731 Gene

Evolution for LINC02731 Gene

ENSEMBL:
Gene Tree for LINC02731 (if available)
TreeFam:
Gene Tree for LINC02731 (if available)

No data available for Orthologs for LINC02731 Gene

Paralogs for LINC02731 Gene

No data available for Paralogs for LINC02731 Gene

Variants for LINC02731 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02731 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02731 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02731

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02731 Gene

Disorders for LINC02731 Gene

Additional Disease Information for LINC02731

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02731 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02731 Gene

Publications for LINC02731 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LINC02731 Gene

Products for LINC02731 Gene

Sources for LINC02731 Gene