Aliases for LINC02730 Gene

Data sources for LINC02730 Gene:

Subcategory (RNA class) for LINC02730 Gene

lncRNA

Aliases for LINC02730 Gene

External Ids for LINC02730 Gene

Previous GeneCards Identifiers for LINC02730 Gene

  • GC11U903157

Summaries for LINC02730 Gene

GeneCards Summary for LINC02730 Gene

LINC02730 (Long Intergenic Non-Protein Coding RNA 2730) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02730 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02730 Gene

Genomics for LINC02730 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02730 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J134008 Enhancer 0.5 Ensembl 250.7 +0.6 586 0.8 JUND ATF2 JUN CREB1 ATF7 ATF3 ZNF600 LINC02730 HSALNG0088353 IGSF9B JAM3 lnc-JAM3-6
GH11J134003 Enhancer 0.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.7 -3727 1.8 ATF2 CREB1 ATF7 piR-30449-033 LINC02731 B3GAT1 LINC02730 IGSF9B JAM3 lnc-JAM3-6
GH11J134028 Enhancer 0.9 ENCODE CraniofacialAtlas dbSUPER 0.4 +18.6 18591 0.6 ZIC2 SIN3A RFX5 RFX1 EGR2 PATZ1 POLR2A GLIS2 ZBTB20 ZFHX2 LINC02731 HSALNG0088355 LINC02730 JAM3 IGSF9B
GH11J134024 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 +16.8 16826 2.9 ZIC2 BHLHE40 EGR2 FOS ZFHX2 HSALNG0088355 LINC02731 LINC02730 JAM3 IGSF9B
GH11J134016 Enhancer 0.3 dbSUPER 0.4 +9.2 9228 2.4 EZH2 ATF2 HSALNG0088354 LINC02730 HSALNG0088353 JAM3 IGSF9B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02730 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02730 Gene

Latest Assembly
chr11:134,008,215-134,031,058
(GRCh38/hg38)
Size:
22,844 bases
Orientation:
Plus strand

Previous Assembly
chr11:133,896,882-133,898,013
(GRCh37/hg19 by Ensembl)
Size:
1,132 bases
Orientation:
Plus strand

Genomic View for LINC02730 Gene

Genes around LINC02730 on UCSC Golden Path with GeneCards custom track
LINC02730 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02730 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02730 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02730 Gene

Proteins for LINC02730 Gene

Post-translational modifications for LINC02730 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02730 Gene

Domains & Families for LINC02730 Gene

Gene Families for LINC02730 Gene

genes like me logo Genes that share domains with LINC02730: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02730 Gene

Function for LINC02730 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02730 Gene

Localization for LINC02730 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02730 Gene

Pathways & Interactions for LINC02730 Gene

PathCards logo

SuperPathways for LINC02730 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02730 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02730 Gene

Drugs & Compounds for LINC02730 Gene

No Compound Related Data Available

Transcripts for LINC02730 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02730 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003921CF_9606 lncRNA 518 4

Ensembl: ENST00000532272 (view in UCSC) ,

LncBook: HSALNT0183783,

LNCipedia: lnc-JAM3-4:1,

NONCODE: NONHSAT025224.2,

URS0000EEAE5B_9606 lncRNA 1299 1

Ensembl: ENST00000661634 (view in UCSC) ,

URS0000EEAFA8_9606 lncRNA 1039 1

Ensembl: ENST00000664263 (view in UCSC) ,

URS0000EEF26F_9606 lncRNA 998 1

Ensembl: ENST00000667347 (view in UCSC) ,

URS0000EEEE0A_9606 lncRNA 918 1

Ensembl: ENST00000660021 (view in UCSC) ,

LINC02730 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02730 Gene

No ASD Table

Relevant External Links for LINC02730 Gene

GeneLoc Exon Structure for
LINC02730

No data available for mRNA/cDNA for LINC02730 Gene

Expression for LINC02730 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02730 Gene

Orthologs for LINC02730 Gene

Evolution for LINC02730 Gene

ENSEMBL:
Gene Tree for LINC02730 (if available)
TreeFam:
Gene Tree for LINC02730 (if available)

No data available for Orthologs for LINC02730 Gene

Paralogs for LINC02730 Gene

No data available for Paralogs for LINC02730 Gene

Variants for LINC02730 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02730 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02730 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02730

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02730 Gene

Disorders for LINC02730 Gene

No disorders were found for LINC02730 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02730 Gene

Publications for LINC02730 Gene

No publications were found for LINC02730 Gene.

No data available for Mastermind for LINC02730 Gene

Products for LINC02730 Gene

Sources for LINC02730 Gene