Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC02727 Gene

Subcategory (RNA class) for LINC02727 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02727 Gene

  • Long Intergenic Non-Protein Coding RNA 2727 2 3
  • Novel Transcript 5
  • AP001782.1 5

External Ids for LINC02727 Gene

Summaries for LINC02727 Gene

GeneCards Summary for LINC02727 Gene

LINC02727 (Long Intergenic Non-Protein Coding RNA 2727) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02727 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02727 Gene

Genomics for LINC02727 Gene

GeneHancer (GH) Regulatory Elements for LINC02727 Gene

Promoters and enhancers for LINC02727 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J123316 Enhancer 0.4 ENCODE 600.7 -1.3 -1266 0 EED RUNX3 FOS LINC02727 GC11P123298 PHBP17
GH11J123312 Enhancer 0.3 Ensembl 600.7 +1.7 1671 1.4 SP1 LINC02727 ENSG00000200496 GC11P123298
GH11J123314 Enhancer 0.2 Ensembl 600.7 +0.2 171 0.8 LINC02727 ENSG00000200496 GC11P123298
GH11J123300 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE 0.4 +12.5 12544 3.6 CTCF NKRF ZNF687 RELA KLF14 CREM MLLT1 RAD21 IKZF1 PKNOX1 ENSG00000200496 GC11P123302 GC11P123298 GC11P123297 LINC02727
GH11J123308 Enhancer 0.5 ENCODE 0.4 +6.6 6642 0.4 IKZF1 IKZF2 RCOR1 BATF EBF1 ENSG00000200496 LINC02727 GC11P123298
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02727 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02727 Gene

Genomic Locations for LINC02727 Gene
chr11:123,313,674-123,314,972
(GRCh38/hg38)
Size:
1,299 bases
Orientation:
Minus strand
chr11:123,184,382-123,185,478
(GRCh37/hg19)
Size:
1,097 bases
Orientation:
Minus strand

Genomic View for LINC02727 Gene

Genes around LINC02727 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02727 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02727 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02727 Gene

Proteins for LINC02727 Gene

Post-translational modifications for LINC02727 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02727 Gene

Domains & Families for LINC02727 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02727 Gene

Function for LINC02727 Gene

Phenotypes From GWAS Catalog for LINC02727 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02727 Gene

Localization for LINC02727 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02727 Gene

Pathways & Interactions for LINC02727 Gene

PathCards logo

SuperPathways for LINC02727 Gene

No Data Available

Interacting Proteins for LINC02727 Gene

Gene Ontology (GO) - Biological Process for LINC02727 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02727 Gene

Drugs & Compounds for LINC02727 Gene

No Compound Related Data Available

Transcripts for LINC02727 Gene

mRNA/cDNA for LINC02727 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02727 Gene

No ASD Table

Relevant External Links for LINC02727 Gene

GeneLoc Exon Structure for
LINC02727
ECgene alternative splicing isoforms for
LINC02727

Expression for LINC02727 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02727 Gene

Orthologs for LINC02727 Gene

Evolution for LINC02727 Gene

ENSEMBL:
Gene Tree for LINC02727 (if available)
TreeFam:
Gene Tree for LINC02727 (if available)

No data available for Orthologs for LINC02727 Gene

Paralogs for LINC02727 Gene

No data available for Paralogs for LINC02727 Gene

Variants for LINC02727 Gene

Sequence variations from dbSNP and Humsavar for LINC02727 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000265065 -- 123,314,928(-) T/C non_coding_transcript_variant
rs1000337488 -- 123,314,692(-) T/C non_coding_transcript_variant
rs1000602783 -- 123,313,854(-) A/G intron_variant
rs1000653200 -- 123,314,043(-) T/G intron_variant
rs1000676362 -- 123,313,631(-) G/T downstream_transcript_variant

Additional Variant Information for LINC02727 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02727

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02727 Gene

Disorders for LINC02727 Gene

No disorders were found for LINC02727 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02727 Gene

Publications for LINC02727 Gene

No publications were found for LINC02727 Gene.

No data available for External Links for LINC02727 Gene

Products for LINC02727 Gene

Sources for LINC02727 Gene

Content
Loading form....