LINC02727 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2727

GC11M123315
GIFtS:
6

Aliases for LINC02727 Gene

Subcategory (RNA class) for LINC02727 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02727 Gene

  • Long Intergenic Non-Protein Coding RNA 2727 2 3 5
  • NONHSAG009903 92
  • HSALNG0087822 167
  • Lnc-CLMP-2 168
  • LINC02727 2

External Ids for LINC02727 Gene

Summaries for LINC02727 Gene

GeneCards Summary for LINC02727 Gene

LINC02727 (Long Intergenic Non-Protein Coding RNA 2727) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02727 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02727 Gene

Genomics for LINC02727 Gene

GeneHancer (GH) Regulatory Elements for LINC02727 Gene

Promoters and enhancers for LINC02727 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J123316 Enhancer 0.4 ENCODE 500.7 -0.9 -898 0 FOS NFIC EED RUNX3 STAT3 LINC02727 lnc-CLMP-4 PHBP17
GH11J123315 Enhancer 0.2 Ensembl 500.7 -0.4 -361 0.2 LINC02727 PHBP17 lnc-CLMP-4
GH11J123314 Enhancer 0.2 Ensembl 500.7 +0.5 539 0.8 LINC02727 HSALNG0087820
GH11J123312 Enhancer 0.3 Ensembl 0.7 +2.1 2139 1.2 TCF12 SP1 LINC02727 HSALNG0087820
GH11J123331 Enhancer 0.5 Ensembl ENCODE 0.4 -15.9 -15861 0.4 ZNF18 FOXA1 lnc-CLMP-4 PHBP17 LINC02727
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02727 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02727 Gene

Genomic Locations for LINC02727 Gene
chr11:123,313,657-123,315,340
(GRCh38/hg38)
Size:
1,684 bases
Orientation:
Minus strand
chr11:123,184,382-123,185,478
(GRCh37/hg19)
Size:
1,097 bases
Orientation:
Minus strand

Genomic View for LINC02727 Gene

Genes around LINC02727 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02727 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02727 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02727 Gene

Proteins for LINC02727 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02727 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02727 Gene

Domains & Families for LINC02727 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02727 Gene

Function for LINC02727 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02727 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02727 Gene

Localization for LINC02727 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02727 Gene

Pathways & Interactions for LINC02727 Gene

PathCards logo

SuperPathways for LINC02727 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02727 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02727 Gene

Drugs & Compounds for LINC02727 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02727 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC02727 Gene

9 RNACentral transcripts :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
4 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02727 Gene

No ASD Table

Relevant External Links for LINC02727 Gene

GeneLoc Exon Structure for
LINC02727

Expression for LINC02727 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02727 Gene

Orthologs for LINC02727 Gene

Evolution for LINC02727 Gene

ENSEMBL:
Gene Tree for LINC02727 (if available)
TreeFam:
Gene Tree for LINC02727 (if available)

No data available for Orthologs for LINC02727 Gene

Paralogs for LINC02727 Gene

No data available for Paralogs for LINC02727 Gene

Variants for LINC02727 Gene

Additional dbSNP identifiers (rs#s) for LINC02727 Gene

Additional Variant Information for LINC02727 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02727

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02727 Gene

Disorders for LINC02727 Gene

No disorders were found for LINC02727 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02727 Gene

Publications for LINC02727 Gene

No publications were found for LINC02727 Gene.

No data available for Mastermind for LINC02727 Gene

Products for LINC02727 Gene

Sources for LINC02727 Gene