Aliases for LINC02720 Gene

Subcategory (RNA class) for LINC02720 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02720 Gene

  • Long Intergenic Non-Protein Coding RNA 2720 2 3 5
  • HSALNG0086015 167
  • NONHSAG009203 92
  • Lnc-TENM4-4 168
  • LINC02720 2

External Ids for LINC02720 Gene

Summaries for LINC02720 Gene

GeneCards Summary for LINC02720 Gene

LINC02720 (Long Intergenic Non-Protein Coding RNA 2720) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02720 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02720 Gene

Genomics for LINC02720 Gene

GeneHancer (GH) Regulatory Elements for LINC02720 Gene

Promoters and enhancers for LINC02720 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J080758 Enhancer 0.3 Ensembl 0.7 +4.0 4026 0.4 EP300 POLR2A LINC02720 LOC105369409 lnc-TENM4-9
GH11J080721 Enhancer 0.7 Ensembl ENCODE 0.3 +40.0 40032 1.8 ESRRA PKNOX1 DPF2 GATA3 SMARCE1 FOS FOSL2 LOC105369409 LINC02720 lnc-TENM4-9
GH11J080782 Enhancer 0.4 Ensembl ENCODE 0.4 -19.5 -19474 1.4 GATA3 piR-57461-034 LINC02720 lnc-TENM4-9
GH11J080783 Enhancer 0.5 Ensembl 0.4 -21.0 -20974 0.4 EP300 MXI1 GATA3 RCOR1 GATA2 CHD2 POLR2A piR-57461-034 LINC02720 lnc-TENM4-9
GH11J080727 Enhancer 0.5 Ensembl 0.3 +35.1 35126 0.2 ZNF217 CTCF RAD21 SMC3 FOXA1 ZNF579 TRIM22 CEBPG LOC105369409 LINC02720 lnc-TENM4-9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02720 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02720 Gene

Genomic Locations for LINC02720 Gene
chr11:80,745,298-80,762,827
(GRCh38/hg38)
Size:
17,530 bases
Orientation:
Minus strand
chr11:80,462,243-80,473,869
(GRCh37/hg19)
Size:
11,627 bases
Orientation:
Minus strand

Genomic View for LINC02720 Gene

Genes around LINC02720 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02720 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02720 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02720 Gene

Proteins for LINC02720 Gene

Post-translational modifications for LINC02720 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02720 Gene

Domains & Families for LINC02720 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02720 Gene

Function for LINC02720 Gene

Phenotypes From GWAS Catalog for LINC02720 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02720 Gene

Localization for LINC02720 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02720 Gene

Pathways & Interactions for LINC02720 Gene

PathCards logo

SuperPathways for LINC02720 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02720 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02720 Gene

Drugs & Compounds for LINC02720 Gene

No Compound Related Data Available

Transcripts for LINC02720 Gene

mRNA/cDNA for LINC02720 Gene

9 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
3 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02720 Gene

No ASD Table

Relevant External Links for LINC02720 Gene

GeneLoc Exon Structure for
LINC02720

Expression for LINC02720 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02720 Gene

Orthologs for LINC02720 Gene

Evolution for LINC02720 Gene

ENSEMBL:
Gene Tree for LINC02720 (if available)
TreeFam:
Gene Tree for LINC02720 (if available)

No data available for Orthologs for LINC02720 Gene

Paralogs for LINC02720 Gene

No data available for Paralogs for LINC02720 Gene

Variants for LINC02720 Gene

Additional dbSNP identifiers (rs#s) for LINC02720 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02720 Gene

Variant ID Type Subtype PubMed ID
esv3892031 CNV gain 25118596
nsv1048620 CNV gain 25217958
nsv1049067 CNV gain 25217958
nsv1051201 CNV gain 25217958
nsv555476 CNV gain 21841781
nsv832217 CNV gain 17160897

Additional Variant Information for LINC02720 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02720

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02720 Gene

Disorders for LINC02720 Gene

No disorders were found for LINC02720 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02720 Gene

Publications for LINC02720 Gene

No publications were found for LINC02720 Gene.

No data available for Mastermind for LINC02720 Gene

Products for LINC02720 Gene

Sources for LINC02720 Gene