Aliases for LINC02717 Gene

Data sources for LINC02717 Gene:

Subcategory (RNA class) for LINC02717 Gene

lncRNA

Aliases for LINC02717 Gene

External Ids for LINC02717 Gene

Summaries for LINC02717 Gene

GeneCards Summary for LINC02717 Gene

LINC02717 (Long Intergenic Non-Protein Coding RNA 2717) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02717 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02717 Gene

Genomics for LINC02717 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02717 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J135008 Enhancer 0.5 Ensembl ENCODE 250.7 +0.9 937 2.2 RCOR1 GATA2 LINC02717 piR-38736-004 LINC02684 LINC02697 LOC105369587 HSALNG0088426 B3GAT1
GH11J134989 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.4 +15.3 15286 6.9 YY1 NANOG POLR2A LINC02684 LINC02697 piR-49097-024 HSALNG0088426 LOC105369587 LINC02717 B3GAT1
GH11J135004 Enhancer 0.3 Ensembl 0.7 +3.7 3737 0.2 CHD2 LOC105369587 piR-38736-004 LINC02684 LINC02697 LINC02717 piR-49097-024 HSALNG0088426 B3GAT1
GH11J134999 Enhancer 0.3 Ensembl 0.4 +8.5 8537 1 RAD21 CTCF LINC02684 LINC02697 LOC105369587 LINC02717 piR-49097-024 HSALNG0088426 B3GAT1
GH11J134998 Enhancer 0.2 Ensembl 0.4 +9.3 9337 0.2 LINC02717 LOC105369587 piR-49097-024 HSALNG0088426 B3GAT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02717 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02717 Gene

Latest Assembly
chr11:134,989,507-135,008,238
(GRCh38/hg38)
Size:
18,732 bases
Orientation:
Minus strand

Genomic View for LINC02717 Gene

Genes around LINC02717 on UCSC Golden Path with GeneCards custom track
LINC02717 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02717 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02717 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02717 Gene

Proteins for LINC02717 Gene

Post-translational modifications for LINC02717 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02717 Gene

Domains & Families for LINC02717 Gene

Gene Families for LINC02717 Gene

genes like me logo Genes that share domains with LINC02717: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02717 Gene

Function for LINC02717 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02717 Gene

Localization for LINC02717 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02717 Gene

Pathways & Interactions for LINC02717 Gene

PathCards logo

SuperPathways for LINC02717 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02717 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02717 Gene

Drugs & Compounds for LINC02717 Gene

No Compound Related Data Available

Transcripts for LINC02717 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02717 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000DB7983_9606 lncRNA 2183 1

Ensembl: ENST00000650337 (view in UCSC) ,

URS0000EEFD0E_9606 lncRNA 1971 1

Ensembl: ENST00000652919 (view in UCSC) ,

URS0001BD1BEA_9606 lncRNA 8175 1

LncBook: HSALNT0183930,

URS0001BF31E0_9606 lncRNA 8117 1

LncBook: HSALNT0183928,

URS0001BCE0D1_9606 lncRNA 7828 1

LncBook: HSALNT0183927,

LINC02717 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02717 Gene

No ASD Table

Relevant External Links for LINC02717 Gene

GeneLoc Exon Structure for
LINC02717

No data available for mRNA/cDNA for LINC02717 Gene

Expression for LINC02717 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02717 Gene

Orthologs for LINC02717 Gene

Evolution for LINC02717 Gene

ENSEMBL:
Gene Tree for LINC02717 (if available)
TreeFam:
Gene Tree for LINC02717 (if available)

No data available for Orthologs for LINC02717 Gene

Paralogs for LINC02717 Gene

No data available for Paralogs for LINC02717 Gene

Variants for LINC02717 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02717 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02717 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02717

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02717 Gene

Disorders for LINC02717 Gene

No disorders were found for LINC02717 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02717 Gene

Publications for LINC02717 Gene

No publications were found for LINC02717 Gene.

No data available for Mastermind for LINC02717 Gene

Products for LINC02717 Gene

Sources for LINC02717 Gene