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Aliases for LINC02717 Gene
Data sources for LINC02717 Gene:
Subcategory (RNA class) for LINC02717 Gene
lncRNA
Aliases for LINC02717 Gene
- Long Intergenic Non-Protein Coding RNA 2717 (HGNC, NCBI Entrez Gene, Ensembl)
- HSALNG0088428 (LncBook)
- LINC02717 (Ensembl)
External Ids for LINC02717 Gene
- HGNC: 54234
- NCBI Entrez Gene: 105369588
- Ensembl: ENSG00000285735
Summaries for LINC02717 Gene
GeneCards Summary for LINC02717 Gene
LINC02717 (Long Intergenic Non-Protein Coding RNA 2717) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC02717 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02717 Gene
Genomics for LINC02717 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02717 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J135008 | Enhancer | 0.5 | Ensembl ENCODE | 250.7 | +0.9 | 937 | 2.2 | RCOR1 GATA2 | LINC02717 piR-38736-004 LINC02684 LINC02697 LOC105369587 HSALNG0088426 B3GAT1 | |
| GH11J134989 | Enhancer | 0.7 | Ensembl ENCODE dbSUPER | 0.4 | +15.3 | 15286 | 6.9 | YY1 NANOG POLR2A | LINC02684 LINC02697 piR-49097-024 HSALNG0088426 LOC105369587 LINC02717 B3GAT1 | |
| GH11J135004 | Enhancer | 0.3 | Ensembl | 0.7 | +3.7 | 3737 | 0.2 | CHD2 | LOC105369587 piR-38736-004 LINC02684 LINC02697 LINC02717 piR-49097-024 HSALNG0088426 B3GAT1 | |
| GH11J134999 | Enhancer | 0.3 | Ensembl | 0.4 | +8.5 | 8537 | 1 | RAD21 CTCF | LINC02684 LINC02697 LOC105369587 LINC02717 piR-49097-024 HSALNG0088426 B3GAT1 | |
| GH11J134998 | Enhancer | 0.2 | Ensembl | 0.4 | +9.3 | 9337 | 0.2 | LINC02717 LOC105369587 piR-49097-024 HSALNG0088426 B3GAT1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02717 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC02717 Gene
Latest Assembly
- chr11:134,989,507-135,008,238
- (GRCh38/hg38)
- Size:
- 18,732 bases
- Orientation:
- Minus strand
Genomic View for LINC02717 Gene
Genes around LINC02717 on UCSC Golden Path with GeneCards custom track
LINC02717 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q25 by HGNC
- 11q25 by Entrez Gene
- 11q25 by Ensembl
LINC02717 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02717 Gene
Proteins for LINC02717 Gene
Post-translational modifications for LINC02717 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC02717 Gene
Domains & Families for LINC02717 Gene
Gene Families for LINC02717 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02717 Gene
Function for LINC02717 Gene
Phenotypes From GWAS Catalog for LINC02717 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02717 Gene
Localization for LINC02717 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02717 Gene
Transcripts for LINC02717 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02717 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000DB7983_9606 | lncRNA | 2183 | 1 |
Ensembl: ENST00000650337 (view in UCSC) , |
| URS0000EEFD0E_9606 | lncRNA | 1971 | 1 |
Ensembl: ENST00000652919 (view in UCSC) , |
| URS0001BD1BEA_9606 | lncRNA | 8175 | 1 |
LncBook: HSALNT0183930, |
| URS0001BF31E0_9606 | lncRNA | 8117 | 1 |
LncBook: HSALNT0183928, |
| URS0001BCE0D1_9606 | lncRNA | 7828 | 1 |
LncBook: HSALNT0183927, |
LINC02717 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC02717 Gene
- GeneLoc Exon Structure for
- LINC02717
No data available for mRNA/cDNA for LINC02717 Gene
Expression for LINC02717 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02717 Gene
Orthologs for LINC02717 Gene
No data available for Orthologs for LINC02717 Gene
Paralogs for LINC02717 Gene
No data available for Paralogs for LINC02717 Gene
Variants for LINC02717 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC02717 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02717
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02717 Gene
Disorders for LINC02717 Gene
No disorders were found for LINC02717 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02717 Gene
Publications for LINC02717 Gene
No publications were found for LINC02717 Gene.
No data available for Mastermind for LINC02717 Gene
Products for LINC02717 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02717
- Origene Custom Protein Services for LINC02717
- Browse OriGene Inhibitory RNA Products For LINC02717
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02717
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02717
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02717
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02717
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02717
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02717
Sources for LINC02717 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB