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LINC02717 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 2717

GCID:
GC11M134997
GIFtS:
7
Genes Participants
UDN Logo

Aliases for LINC02717 Gene

Subcategory (RNA class) for LINC02717 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02717 Gene

  • Long Intergenic Non-Protein Coding RNA 2717 2 3
  • Novel Transcript 5
  • AP003062.3 5

External Ids for LINC02717 Gene

Summaries for LINC02717 Gene

GeneCards Summary for LINC02717 Gene

LINC02717 (Long Intergenic Non-Protein Coding RNA 2717) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02717 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02717 Gene

Genomics for LINC02717 Gene

GeneHancer (GH) Regulatory Elements for LINC02717 Gene

Promoters and enhancers for LINC02717 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J135008 Enhancer 0.5 Ensembl ENCODE 600.7 +0.4 411 1.8 RCOR1 LINC02717 LINC02684 LINC02697 LOC105369587
GH11J135033 Enhancer 0.8 Ensembl ENCODE 0.3 -25.7 -25689 1.2 ZIC2 CTCF USF1 ZBTB17 SMC3 RAD21 ZNF654 BHLHE40 USF2 LINC02684 LINC02717
GH11J134999 Enhancer 0.3 Ensembl 0.4 +8.3 8311 0.8 POLR2A LINC02684 GC11M134998 LINC02717 GC11P134990
GH11J135004 Enhancer 0.2 Ensembl 0.7 +3.4 3411 0.2 GC11M134998 LOC105369587 LINC02684 LINC02697 LINC02717
GH11J135026 Enhancer 0.3 Ensembl 0.4 -19.2 -19189 0.6 REST LINC02717 LINC02684
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02717 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02717 Gene

Genomic Locations for LINC02717 Gene
chr11:134,996,907-135,007,912
(GRCh38/hg38)
Size:
11,006 bases
Orientation:
Minus strand

Genomic View for LINC02717 Gene

Genes around LINC02717 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02717 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02717 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02717 Gene

Proteins for LINC02717 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02717 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02717 Gene

Domains & Families for LINC02717 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02717 Gene

Function for LINC02717 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02717 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02717 Gene

Localization for LINC02717 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02717 Gene

Pathways & Interactions for LINC02717 Gene

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SuperPathways for LINC02717 Gene

No Data Available

Interacting Proteins for LINC02717 Gene

Gene Ontology (GO) - Biological Process for LINC02717 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02717 Gene

Drugs & Compounds for LINC02717 Gene

Products:

  1. Drug
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Compound Related Data Available

Transcripts for LINC02717 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC02717 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02717 Gene

No ASD Table

Relevant External Links for LINC02717 Gene

GeneLoc Exon Structure for
LINC02717
ECgene alternative splicing isoforms for
LINC02717

Expression for LINC02717 Gene

Products:

  1. Primer
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02717 Gene

Orthologs for LINC02717 Gene

Evolution for LINC02717 Gene

ENSEMBL:
Gene Tree for LINC02717 (if available)
TreeFam:
Gene Tree for LINC02717 (if available)

No data available for Orthologs for LINC02717 Gene

Paralogs for LINC02717 Gene

No data available for Paralogs for LINC02717 Gene

Variants for LINC02717 Gene

VarElect - NGS phenotyper. Rapid prioritization of variants from NGS data powered by 100+ GeneCards sources

Sequence variations from dbSNP and Humsavar for LINC02717 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1001062217 -- 134,999,404(-) A/G intron_variant
rs1001111580 -- 134,999,085(-) T/C intron_variant
rs1001230892 -- 134,998,561(-) C/T intron_variant, non_coding_transcript_variant
rs1001284656 -- 134,998,779(-) A/G intron_variant, non_coding_transcript_variant
rs1001576199 -- 135,004,000(-) G/T intron_variant

Additional Variant Information for LINC02717 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02717

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02717 Gene

Disorders for LINC02717 Gene

No disorders were found for LINC02717 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02717 Gene

Publications for LINC02717 Gene

No publications were found for LINC02717 Gene.

No data available for External Links for LINC02717 Gene

Products for LINC02717 Gene

Sources for LINC02717 Gene

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