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Aliases for LINC02715 Gene

Subcategory (RNA class) for LINC02715 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02715 Gene

  • Long Intergenic Non-Protein Coding RNA 2715 2 3
  • Novel Transcript 5
  • AP002444.1 5

External Ids for LINC02715 Gene

Summaries for LINC02715 Gene

GeneCards Summary for LINC02715 Gene

LINC02715 (Long Intergenic Non-Protein Coding RNA 2715) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02715 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02715 Gene

Genomics for LINC02715 Gene

GeneHancer (GH) Regulatory Elements for LINC02715 Gene

Promoters and enhancers for LINC02715 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J109853 Enhancer 0.8 Ensembl ENCODE 0.3 -29.5 -29457 0.6 CC2D1A CTCF RAD21 ARID2 REST TRIM22 BCLAF1 SMC3 NFIC ZNF654 LOC105369483 LINC02715
GH11J109783 Enhancer 0.9 Ensembl ENCODE 0.3 +40.2 40203 2.1 PRDM10 ZIC2 ZEB2 ZNF629 ZBTB20 ZXDB OSR2 POLR2A ZFHX2 ZFP69B LINC02715 ENSG00000254482
GH11J109808 Enhancer 0.5 Ensembl 0.4 +15.0 15043 0.8 BACH1 MAFK ZNF316 NFE2 MAFG NFE2L2 EMSY LINC02715 ENSG00000254482
GH11J109857 Enhancer 0.6 ENCODE 0.3 -35.5 -35488 2.7 MAFK USF1 FOS FOSL1 FOSL2 JUN ADNP PRDM10 KDM1A JUND LOC105369483 LINC02715
GH11J109747 Enhancer 0.8 FANTOM5 ENCODE 0.2 +75.8 75789 0.5 SMARCA4 ETV6 NFE2 FOSL1 DPF2 SMARCE1 ZC3H12C LINC02715 ENSG00000254482
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02715 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02715 Gene

Genomic Locations for LINC02715 Gene
chr11:109,780,980-109,823,844
(GRCh38/hg38)
Size:
42,865 bases
Orientation:
Minus strand
chr11:109,622,168-109,694,573
(GRCh37/hg19)
Size:
72,406 bases
Orientation:
Minus strand

Genomic View for LINC02715 Gene

Genes around LINC02715 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02715 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02715 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02715 Gene

Proteins for LINC02715 Gene

Post-translational modifications for LINC02715 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02715 Gene

Domains & Families for LINC02715 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02715 Gene

Function for LINC02715 Gene

Phenotypes From GWAS Catalog for LINC02715 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02715 Gene

Localization for LINC02715 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02715 Gene

Pathways & Interactions for LINC02715 Gene

PathCards logo

SuperPathways for LINC02715 Gene

No Data Available

Interacting Proteins for LINC02715 Gene

Gene Ontology (GO) - Biological Process for LINC02715 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02715 Gene

Drugs & Compounds for LINC02715 Gene

No Compound Related Data Available

Transcripts for LINC02715 Gene

mRNA/cDNA for LINC02715 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02715 Gene

No ASD Table

Relevant External Links for LINC02715 Gene

GeneLoc Exon Structure for
LINC02715
ECgene alternative splicing isoforms for
LINC02715

Expression for LINC02715 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02715 Gene

Orthologs for LINC02715 Gene

Evolution for LINC02715 Gene

ENSEMBL:
Gene Tree for LINC02715 (if available)
TreeFam:
Gene Tree for LINC02715 (if available)

No data available for Orthologs for LINC02715 Gene

Paralogs for LINC02715 Gene

No data available for Paralogs for LINC02715 Gene

Variants for LINC02715 Gene

Sequence variations from dbSNP and Humsavar for LINC02715 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000000355 -- 109,779,244(-) C/G genic_downstream_transcript_variant, intron_variant
rs1000054050 -- 109,820,927(-) A/C intron_variant
rs1000077872 -- 109,745,784(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000116435 -- 109,808,783(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000172646 -- 109,767,808(-) AAAAAAA/AAAAAA/AAAAAAAA genic_downstream_transcript_variant, intron_variant

Additional Variant Information for LINC02715 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02715

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02715 Gene

Disorders for LINC02715 Gene

No disorders were found for LINC02715 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02715 Gene

Publications for LINC02715 Gene

No publications were found for LINC02715 Gene.

No data available for External Links for LINC02715 Gene

Products for LINC02715 Gene

Sources for LINC02715 Gene

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