Aliases for LINC02713 Gene

Subcategory (RNA class) for LINC02713 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02713 Gene

  • Long Intergenic Non-Protein Coding RNA 2713 2 3 5
  • LINC02713 2 5
  • NONHSAG009439.2 91
  • HSALNG0086648 164
  • Lnc-CCDC82-3 165

External Ids for LINC02713 Gene

Summaries for LINC02713 Gene

GeneCards Summary for LINC02713 Gene

LINC02713 (Long Intergenic Non-Protein Coding RNA 2713) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02713 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02713 Gene

Genomics for LINC02713 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02713 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J097963 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 18.4 -5.7 -5743 4.2 LEF1 IKZF1 JUND DDX20 MTA2 PKNOX1 ZNF24 MTA1 REST ZNF740 LINC02713 piR-30791-017
GH11J097973 Enhancer 1.2 Ensembl ENCODE dbSUPER 5 -14.1 -14053 0.4 JUND MTA2 PKNOX1 MTA1 NR2C1 ZNF24 ZNF740 BRD9 FOXJ2 EP300 LINC02713 piR-30791-017
GH11J097940 Enhancer 0.2 Ensembl 13.5 +18.6 18557 0.8 LINC02713 piR-52368-027
GH11J097856 Enhancer 0.5 Ensembl 4.5 +102.7 102657 0.6 EZH2 SMARCA4 NANOG SP1 POU5F1 LINC02713 piR-37663-017 ENSG00000254555 lnc-CCDC82-11
GH11J097937 Enhancer 0.3 Ensembl 5.9 +20.7 20657 0.6 NANOG LINC02713 piR-52368-027
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02713 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02713 Gene

Genomic Locations for LINC02713 Gene
chr11:97,878,475-97,959,558
(GRCh38/hg38)
Size:
81,084 bases
Orientation:
Minus strand
chr11:97,749,781-97,813,762
(GRCh37/hg19)
Size:
63,982 bases
Orientation:
Minus strand

Genomic View for LINC02713 Gene

Genes around LINC02713 on UCSC Golden Path with GeneCards custom track
LINC02713 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02713 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02713 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02713 Gene

Proteins for LINC02713 Gene

Post-translational modifications for LINC02713 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02713 Gene

Domains & Families for LINC02713 Gene

Gene Families for LINC02713 Gene

genes like me logo Genes that share domains with LINC02713: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02713 Gene

Function for LINC02713 Gene

Phenotypes From GWAS Catalog for LINC02713 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02713 Gene

Localization for LINC02713 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02713 Gene

Pathways & Interactions for LINC02713 Gene

PathCards logo

SuperPathways for LINC02713 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02713 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02713 Gene

Drugs & Compounds for LINC02713 Gene

No Compound Related Data Available

Transcripts for LINC02713 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02713 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000E2A48_9606 lncRNA 774 4

Ensembl: ENST00000527281 (view in UCSC) ,

LncBook: HSALNT0180155,

LNCipedia: lnc-CCDC82-3:2,

NONCODE: NONHSAT023824.2,

URS000020A853_9606 lncRNA 546 4

Ensembl: ENST00000526385 (view in UCSC) ,

LncBook: HSALNT0180149,

LNCipedia: lnc-CCDC82-3:3,

NONCODE: NONHSAT023821.2,

URS0000EF1806_9606 lncRNA 1109 2

HGNC: 54230,

Ensembl: ENST00000667368 (view in UCSC) ,

URS0000EF4CE7_9606 lncRNA 1021 1

Ensembl: ENST00000653025 (view in UCSC) ,

URS0000EEB15F_9606 lncRNA 763 1

Ensembl: ENST00000665262 (view in UCSC) ,

LINC02713 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02713 Gene

No ASD Table

Relevant External Links for LINC02713 Gene

GeneLoc Exon Structure for
LINC02713

No data available for mRNA/cDNA for LINC02713 Gene

Expression for LINC02713 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02713 Gene

Orthologs for LINC02713 Gene

Evolution for LINC02713 Gene

ENSEMBL:
Gene Tree for LINC02713 (if available)
TreeFam:
Gene Tree for LINC02713 (if available)

No data available for Orthologs for LINC02713 Gene

Paralogs for LINC02713 Gene

No data available for Paralogs for LINC02713 Gene

Variants for LINC02713 Gene

Additional dbSNP identifiers (rs#s) for LINC02713 Gene

Additional Variant Information for LINC02713 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02713

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02713 Gene

Disorders for LINC02713 Gene

No disorders were found for LINC02713 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02713 Gene

Publications for LINC02713 Gene

No publications were found for LINC02713 Gene.

No data available for Mastermind for LINC02713 Gene

Products for LINC02713 Gene

Sources for LINC02713 Gene