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Aliases for LINC02712 Gene

Subcategory (RNA class) for LINC02712 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02712 Gene

  • Long Intergenic Non-Protein Coding RNA 2712 2 3
  • Novel Transcript 5
  • AP003481.1 5

External Ids for LINC02712 Gene

Summaries for LINC02712 Gene

GeneCards Summary for LINC02712 Gene

LINC02712 (Long Intergenic Non-Protein Coding RNA 2712) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02712 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02712 Gene

Genomics for LINC02712 Gene

GeneHancer (GH) Regulatory Elements for LINC02712 Gene

Promoters and enhancers for LINC02712 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J127251 Enhancer 0.4 Ensembl 0.4 -18.6 -18628 1.2 RUNX3 ATF2 GC11M127206 LINC02712
GH11J127275 Enhancer 0.2 Ensembl 0.7 +4.4 4372 0.8 LINC02712 GC11P127344
GH11J127338 Enhancer 0.6 Ensembl ENCODE 0.2 +67.9 67872 1.4 POLR2A NANOG GC11P127344 LINC02712
GH11J127290 Enhancer 0.2 Ensembl 0.4 +19.7 19672 0.2 LINC02712 GC11P127344
GH11J127255 Enhancer 0.2 Ensembl 0.4 -15.7 -15728 0.2 GC11M127206 LINC02712
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02712 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02712 Gene

Genomic Locations for LINC02712 Gene
chr11:127,271,029-127,337,033
(GRCh38/hg38)
Size:
66,005 bases
Orientation:
Plus strand
chr11:127,140,957-127,206,928
(GRCh37/hg19)
Size:
65,972 bases
Orientation:
Plus strand

Genomic View for LINC02712 Gene

Genes around LINC02712 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02712 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02712 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02712 Gene

Proteins for LINC02712 Gene

Post-translational modifications for LINC02712 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02712 Gene

Domains & Families for LINC02712 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02712 Gene

Function for LINC02712 Gene

Phenotypes From GWAS Catalog for LINC02712 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02712 Gene

Localization for LINC02712 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02712 Gene

Pathways & Interactions for LINC02712 Gene

PathCards logo

SuperPathways for LINC02712 Gene

No Data Available

Interacting Proteins for LINC02712 Gene

Gene Ontology (GO) - Biological Process for LINC02712 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02712 Gene

Drugs & Compounds for LINC02712 Gene

No Compound Related Data Available

Transcripts for LINC02712 Gene

mRNA/cDNA for LINC02712 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02712 Gene

No ASD Table

Relevant External Links for LINC02712 Gene

GeneLoc Exon Structure for
LINC02712
ECgene alternative splicing isoforms for
LINC02712

Expression for LINC02712 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02712 Gene

Orthologs for LINC02712 Gene

Evolution for LINC02712 Gene

ENSEMBL:
Gene Tree for LINC02712 (if available)
TreeFam:
Gene Tree for LINC02712 (if available)

No data available for Orthologs for LINC02712 Gene

Paralogs for LINC02712 Gene

No data available for Paralogs for LINC02712 Gene

Variants for LINC02712 Gene

Sequence variations from dbSNP and Humsavar for LINC02712 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000025387 -- 127,270,980(+) A/G upstream_transcript_variant
rs1000048601 -- 127,322,635(+) C/T intron_variant
rs1000145419 -- 127,303,753(+) C/A intron_variant
rs1000227562 -- 127,298,255(+) G/C intron_variant
rs1000279596 -- 127,328,259(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02712 Gene

Variant ID Type Subtype PubMed ID
esv2759870 CNV loss 17122850
esv28779 CNV loss 19812545
esv3628019 CNV loss 21293372
nsv1037531 CNV gain 25217958
nsv1039891 CNV gain 25217958
nsv1050677 CNV gain 25217958
nsv1053829 CNV loss 25217958
nsv519489 CNV gain 19592680
nsv528334 CNV gain 19592680
nsv556534 CNV loss 21841781
nsv818870 CNV loss 17921354

Additional Variant Information for LINC02712 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02712

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02712 Gene

Disorders for LINC02712 Gene

No disorders were found for LINC02712 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02712 Gene

Publications for LINC02712 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LINC02712 Gene

Products for LINC02712 Gene

Sources for LINC02712 Gene

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