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Aliases for LINC02702 Gene

Subcategory (RNA class) for LINC02702 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02702 Gene

  • Long Intergenic Non-Protein Coding RNA 2702 2 3
  • Novel Transcript 5
  • AP000770.1 5

External Ids for LINC02702 Gene

Summaries for LINC02702 Gene

GeneCards Summary for LINC02702 Gene

LINC02702 (Long Intergenic Non-Protein Coding RNA 2702) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02702 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02702 Gene

Genomics for LINC02702 Gene

GeneHancer (GH) Regulatory Elements for LINC02702 Gene

Promoters and enhancers for LINC02702 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J116639 Enhancer 0.3 Ensembl 600.7 +0.8 779 1.2 ZNF146 LINC02702 GC11P116656
GH11J116661 Enhancer 0.9 Ensembl ENCODE 9.3 +21.3 21279 5.4 SP1 RXRA RFX1 CEBPA GATAD2A FOXA2 JUND USF1 YY1 ZBTB33 LINC02702 ENSG00000254851 SIK3 GC11P116656 GC11M116662
GH11J116651 Enhancer 0.9 VISTA Ensembl 5.6 +12.3 12279 1.4 CBFA2T2 LEF1 NCOR1 TCF12 TAL1 CBFA2T3 ENSG00000254851 LINC02702 GC11P116656
GH11J116696 Enhancer 0.7 Ensembl ENCODE 5.8 +57.4 57379 1.2 ZNF512 ZNF316 ZFHX2 ZNF366 FOS BACH1 EGR2 ENSG00000254851 LINC02702 GC11M116662 BUD13
GH11J116683 Enhancer 0.4 Ensembl 8.5 +44.6 44579 1.6 ZFHX2 ZNF507 EGR2 RNF214 BUD13 LINC02702 ENSG00000254851 GC11M116662
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02702 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02702 Gene

Genomic Locations for LINC02702 Gene
chr11:116,639,422-116,658,252
(GRCh38/hg38)
Size:
18,831 bases
Orientation:
Plus strand
chr11:116,510,139-116,528,969
(GRCh37/hg19)
Size:
18,831 bases
Orientation:
Plus strand

Genomic View for LINC02702 Gene

Genes around LINC02702 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02702 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02702 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02702 Gene

Proteins for LINC02702 Gene

Post-translational modifications for LINC02702 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02702 Gene

Domains & Families for LINC02702 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02702 Gene

Function for LINC02702 Gene

Phenotypes From GWAS Catalog for LINC02702 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02702 Gene

Localization for LINC02702 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02702 Gene

Pathways & Interactions for LINC02702 Gene

PathCards logo

SuperPathways for LINC02702 Gene

No Data Available

Interacting Proteins for LINC02702 Gene

Gene Ontology (GO) - Biological Process for LINC02702 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02702 Gene

Drugs & Compounds for LINC02702 Gene

No Compound Related Data Available

Transcripts for LINC02702 Gene

mRNA/cDNA for LINC02702 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02702 Gene

No ASD Table

Relevant External Links for LINC02702 Gene

GeneLoc Exon Structure for
LINC02702
ECgene alternative splicing isoforms for
LINC02702

Expression for LINC02702 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02702 Gene

Orthologs for LINC02702 Gene

Evolution for LINC02702 Gene

ENSEMBL:
Gene Tree for LINC02702 (if available)
TreeFam:
Gene Tree for LINC02702 (if available)

No data available for Orthologs for LINC02702 Gene

Paralogs for LINC02702 Gene

No data available for Paralogs for LINC02702 Gene

Variants for LINC02702 Gene

Sequence variations from dbSNP and Humsavar for LINC02702 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000198837 -- 116,646,980(+) C/A intron_variant
rs1000200 -- 116,646,660(+) G/T intron_variant
rs1000319564 -- 116,639,875(+) AAATAA/AA intron_variant
rs1000332673 -- 116,642,295(+) T/G intron_variant
rs1000561583 -- 116,648,328(+) G/C intron_variant

Additional Variant Information for LINC02702 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02702

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02702 Gene

Disorders for LINC02702 Gene

No disorders were found for LINC02702 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02702 Gene

Publications for LINC02702 Gene

  1. Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population. (PMID: 21160409) Petrovski S … Center for HIV/AIDS Vaccine Immunology (AIDS (London, England) 2011) 3 58

No data available for External Links for LINC02702 Gene

Products for LINC02702 Gene

Sources for LINC02702 Gene

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