Aliases for LINC02702 Gene

Data sources for LINC02702 Gene:

RNA type for LINC02702 Gene

lncRNA

Aliases for LINC02702 Gene

External Ids for LINC02702 Gene

Summaries for LINC02702 Gene

GeneCards Summary for LINC02702 Gene

LINC02702 (Long Intergenic Non-Protein Coding RNA 2702) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02702 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02702 Gene

Genomics for LINC02702 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02702 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J116651 Enhancer 0.8 VISTA Ensembl 5.6 +12.2 12180 1.2 NCOR1 TAL1 TCF12 ARID1B CBFA2T2 LEF1 CBFA2T3 ENSG00000254851 LINC02702 lnc-CADM1-3 BUD13
GH11J116696 Enhancer 0.7 Ensembl ENCODE 5.9 +57.1 57135 1.9 ZNF316 MAFK ZNF366 EGR2 FOS ZNF512 BACH1 MTA2 ZFHX2 PRDM1 ENSG00000254851 LINC02702 lnc-APOC3-7 HSALNG0087405 BUD13
GH11J116691 Enhancer 0.6 Ensembl 4.6 +52.4 52419 0.5 ZNF654 ZBTB10 CTCF REST TRIM22 RAD21 SMC3 ZNF143 EGR2 YY1 lnc-APOC3-7 ENSG00000254851 LINC02702 HSALNG0087403 BUD13
GH11J116693 Enhancer 0.3 ENCODE 6 +54.5 54546 1 ZSCAN4 lnc-APOC3-7 LINC02702 HSALNG0087405 BUD13
GH11J116641 Enhancer 0.7 Ensembl ENCODE 0.7 +2.1 2133 0.7 ZNF654 REST CTCF RAD21 SMC3 ZNF143 XRCC5 POLR2A TRIM22 LINC02702 lnc-CADM1-3 BUD13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02702 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02702 Gene

Latest Assembly
chr11:116,639,421-116,658,295
(GRCh38/hg38)
Size:
18,875 bases
Orientation:
Plus strand

Previous Assembly
chr11:116,510,139-116,528,969
(GRCh37/hg19 by Entrez Gene)
Size:
18,831 bases
Orientation:
Plus strand

chr11:116,510,139-116,528,969
(GRCh37/hg19 by Ensembl)
Size:
18,831 bases
Orientation:
Plus strand

Genomic View for LINC02702 Gene

Genes around LINC02702 on UCSC Golden Path with GeneCards custom track
LINC02702 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02702 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02702 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02702 Gene

Proteins for LINC02702 Gene

Post-translational modifications for LINC02702 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02702 Gene

Domains & Families for LINC02702 Gene

Gene Families for LINC02702 Gene

genes like me logo Genes that share domains with LINC02702: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02702 Gene

Function for LINC02702 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02702 Gene

Localization for LINC02702 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02702 Gene

Pathways & Interactions for LINC02702 Gene

PathCards logo

SuperPathways for LINC02702 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02702 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02702 Gene

Drugs & Compounds for LINC02702 Gene

No Compound Related Data Available

Transcripts for LINC02702 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02702 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000045B90D_9606 lncRNA 583 4

Ensembl: ENST00000444123 (view in UCSC) ,

LncBook: HSALNT0181669,

LNCipedia: lnc-APOC3-4:1,

NONCODE: NONHSAT024350.2,

URS0000EF1804_9606 lncRNA 1064 1

Ensembl: ENST00000669244 (view in UCSC) ,

URS0000EF2642_9606 lncRNA 862 1

Ensembl: ENST00000665087 (view in UCSC) ,

URS0000EF4CE4_9606 lncRNA 676 1

Ensembl: ENST00000439483 (view in UCSC) ,

URS0000A774C8_9606 lncRNA 583 1

RefSeq: NR_135069,

LINC02702 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02702 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02702 Gene

No ASD Table

Relevant External Links for LINC02702 Gene

GeneLoc Exon Structure for
LINC02702

Expression for LINC02702 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02702 Gene

Orthologs for LINC02702 Gene

Evolution for LINC02702 Gene

ENSEMBL:
Gene Tree for LINC02702 (if available)
TreeFam:
Gene Tree for LINC02702 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02702

No data available for Orthologs for LINC02702 Gene

Paralogs for LINC02702 Gene

No data available for Paralogs for LINC02702 Gene

Variants for LINC02702 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02702 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02702 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02702
Leiden Open Variation Database (LOVD)
LINC02702

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02702 Gene

Disorders for LINC02702 Gene

No disorders were found for LINC02702 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02702 Gene

Publications for LINC02702 Gene

  1. Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population. (PMID: 21160409) Petrovski S … Center for HIV/AIDS Vaccine Immunology (AIDS (London, England) 2011) 3

No data available for Mastermind for LINC02702 Gene

Products for LINC02702 Gene

Sources for LINC02702 Gene