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Aliases for LINC02701 Gene

Subcategory (RNA class) for LINC02701 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02701 Gene

  • Long Intergenic Non-Protein Coding RNA 2701 2 3
  • Novel Transcript 5
  • AP000808.1 5

External Ids for LINC02701 Gene

Summaries for LINC02701 Gene

GeneCards Summary for LINC02701 Gene

LINC02701 (Long Intergenic Non-Protein Coding RNA 2701) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02701 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02701 Gene

Genomics for LINC02701 Gene

GeneHancer (GH) Regulatory Elements for LINC02701 Gene

Promoters and enhancers for LINC02701 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J068869 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 620.7 -0.1 -121 1.4 ZNF652 CTCF MLLT1 GTF2F1 CDC5L PRDM1 EGR1 IKZF1 ZNF512 MGA LINC02701 IGHMBP2 MRPL21 TESMIN MRGPRF-AS1 MRGPRF CPT1A
GH11J068902 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 19.4 +33.7 33749 3.5 ZNF652 ZFX SP1 ELF3 MNT SIX5 NKRF MLLT1 ZNF121 CEBPG IGHMBP2 MRPL21 KMT5B LTO1 MRGPRF LINC02701 PPP6R3 ENSG00000260808 TPCN2 ENSG00000261625
GH11J068854 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 20.7 -13.6 -13550 3.8 ELF3 MNT CEBPG RERE ZSCAN21 BACH1 ZNF24 MAFK TFE3 SP1 IGHMBP2 LINC02701 TESMIN MRPL21 CPT1A
GH11J068889 Enhancer 0.9 Ensembl ENCODE 20.1 +20.4 20399 2.6 SP1 POLR2A ZBTB33 RXRA ZIC2 FOXA2 CTCF JUND YY1 GABPA IGHMBP2 LINC02701 MRPL21
GH11J068941 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 9.2 +73.9 73879 5.8 CBFA2T2 NCOA3 BACH1 MAFK TRIM24 EGR1 SMARCA4 GMEB1 DPF2 IKZF1 ENSG00000255741 IGHMBP2 MRPL21 LINC02701 PIR43978
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02701 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02701 Gene

Genomic Locations for LINC02701 Gene
chr11:68,870,422-68,874,548
(GRCh38/hg38)
Size:
4,127 bases
Orientation:
Plus strand
chr11:68,638,132-68,642,010
(GRCh37/hg19)
Size:
3,879 bases
Orientation:
Plus strand

Genomic View for LINC02701 Gene

Genes around LINC02701 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02701 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02701 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02701 Gene

Proteins for LINC02701 Gene

Post-translational modifications for LINC02701 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02701 Gene

Domains & Families for LINC02701 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02701 Gene

Function for LINC02701 Gene

Phenotypes From GWAS Catalog for LINC02701 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02701 Gene

Localization for LINC02701 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02701 Gene

Pathways & Interactions for LINC02701 Gene

PathCards logo

SuperPathways for LINC02701 Gene

No Data Available

Interacting Proteins for LINC02701 Gene

Gene Ontology (GO) - Biological Process for LINC02701 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02701 Gene

Drugs & Compounds for LINC02701 Gene

No Compound Related Data Available

Transcripts for LINC02701 Gene

mRNA/cDNA for LINC02701 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02701 Gene

No ASD Table

Relevant External Links for LINC02701 Gene

GeneLoc Exon Structure for
LINC02701
ECgene alternative splicing isoforms for
LINC02701

Expression for LINC02701 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02701 Gene

Orthologs for LINC02701 Gene

Evolution for LINC02701 Gene

ENSEMBL:
Gene Tree for LINC02701 (if available)
TreeFam:
Gene Tree for LINC02701 (if available)

No data available for Orthologs for LINC02701 Gene

Paralogs for LINC02701 Gene

No data available for Paralogs for LINC02701 Gene

Variants for LINC02701 Gene

Sequence variations from dbSNP and Humsavar for LINC02701 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000180375 -- 68,868,496(+) G/A upstream_transcript_variant
rs1000531121 -- 68,870,325(+) G/A upstream_transcript_variant
rs1000605486 -- 68,874,588(+) A/G downstream_transcript_variant
rs1000810534 -- 68,874,848(+) G/C downstream_transcript_variant
rs1002031535 -- 68,871,071(+) TGT/T intron_variant

Additional Variant Information for LINC02701 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02701

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02701 Gene

Disorders for LINC02701 Gene

No disorders were found for LINC02701 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02701 Gene

Publications for LINC02701 Gene

No publications were found for LINC02701 Gene.

No data available for External Links for LINC02701 Gene

Products for LINC02701 Gene

Sources for LINC02701 Gene

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