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Aliases for LINC02700 Gene

Subcategory (RNA class) for LINC02700 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02700 Gene

  • Long Intergenic Non-Protein Coding RNA 2700 2 3
  • Novel Transcript 5
  • AP000943.2 5

External Ids for LINC02700 Gene

Summaries for LINC02700 Gene

GeneCards Summary for LINC02700 Gene

LINC02700 (Long Intergenic Non-Protein Coding RNA 2700) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02700 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02700 Gene

Genomics for LINC02700 Gene

GeneHancer (GH) Regulatory Elements for LINC02700 Gene

Promoters and enhancers for LINC02700 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J094636 Enhancer 0.6 Ensembl 614.4 +1.9 1863 0.4 PKNOX1 ZNF316 NFE2 MAFG MAFK ZNF592 TAL1 TEAD4 EMSY LINC02700 ENSG00000233536 ENSG00000255929
GH11J094634 Enhancer 0.6 Ensembl 609.4 +0.4 363 0.6 RFX1 NR2C1 NRF1 MGA ZBTB11 NR2C2 DIDO1 L3MBTL2 LINC02700 ENSG00000255929 ENSG00000233536
GH11J094637 Promoter/Enhancer 1.3 Ensembl ENCODE 16 +4.9 4912 3.9 ZKSCAN8 GTF2F1 IKZF1 GTF2E2 PKNOX1 HDAC1 CEBPB MGA NFE2 ZNF10 ENSG00000233536 LINC02700 MRE11 GC11M094645 ENSG00000255929
GH11J094648 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE 14.6 +16.6 16575 5.6 SP1 RXRA POLR2A SCRT2 USF1 SCRT1 RCOR1 GATA3 CEBPG CEBPB LINC02700 AMOTL1 ENSG00000255929 KDM4E GC11M094652 GC11M094645
GH11J094543 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 6.4 -89.1 -89137 8.4 ZFX NKRF MLLT1 ZNF121 GTF2F1 ZNF687 ZSCAN21 NCOA3 NCOA6 TRIM24 FUT4 PIWIL4 GC11M094542 MRE11 MED17 CEP295 ANKRD49 SNORA1 ENSG00000255893 LINC02700
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02700 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02700 Gene

Genomic Locations for LINC02700 Gene
chr11:94,634,738-94,657,461
(GRCh38/hg38)
Size:
22,724 bases
Orientation:
Plus strand
chr11:94,375,073-94,384,797
(GRCh37/hg19)
Size:
9,725 bases
Orientation:
Plus strand

Genomic View for LINC02700 Gene

Genes around LINC02700 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02700 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02700 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02700 Gene

Proteins for LINC02700 Gene

Post-translational modifications for LINC02700 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02700 Gene

Domains & Families for LINC02700 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02700 Gene

Function for LINC02700 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02700 Gene

Localization for LINC02700 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02700 Gene

Pathways & Interactions for LINC02700 Gene

PathCards logo

SuperPathways for LINC02700 Gene

No Data Available

Interacting Proteins for LINC02700 Gene

Gene Ontology (GO) - Biological Process for LINC02700 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02700 Gene

Drugs & Compounds for LINC02700 Gene

No Compound Related Data Available

Transcripts for LINC02700 Gene

mRNA/cDNA for LINC02700 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02700 Gene

No ASD Table

Relevant External Links for LINC02700 Gene

GeneLoc Exon Structure for
LINC02700
ECgene alternative splicing isoforms for
LINC02700

Expression for LINC02700 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02700 Gene

Orthologs for LINC02700 Gene

Evolution for LINC02700 Gene

ENSEMBL:
Gene Tree for LINC02700 (if available)
TreeFam:
Gene Tree for LINC02700 (if available)

No data available for Orthologs for LINC02700 Gene

Paralogs for LINC02700 Gene

No data available for Paralogs for LINC02700 Gene

Variants for LINC02700 Gene

Sequence variations from dbSNP and Humsavar for LINC02700 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000119355 -- 94,651,324(+) T/C intron_variant
rs1000198440 -- 94,653,619(+) A/G non_coding_transcript_variant
rs1000220679 -- 94,646,058(+) A/C intron_variant
rs1000648302 -- 94,644,165(+) C/T intron_variant
rs1000667766 -- 94,638,438(+) A/G genic_upstream_transcript_variant, intron_variant, non_coding_transcript_variant

Additional Variant Information for LINC02700 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02700

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02700 Gene

Disorders for LINC02700 Gene

No disorders were found for LINC02700 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02700 Gene

Publications for LINC02700 Gene

No publications were found for LINC02700 Gene.

No data available for External Links for LINC02700 Gene

Products for LINC02700 Gene

Sources for LINC02700 Gene

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