Aliases for LINC02698 Gene

Subcategory (RNA class) for LINC02698 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02698 Gene

  • Long Intergenic Non-Protein Coding RNA 2698 2 3 5
  • LINC02698 2 5
  • NONHSAG009686.2 91
  • HSALNG0087358 164
  • Lnc-APOC3-6 165

External Ids for LINC02698 Gene

Previous GeneCards Identifiers for LINC02698 Gene

  • GC11P115901

Summaries for LINC02698 Gene

GeneCards Summary for LINC02698 Gene

LINC02698 (Long Intergenic Non-Protein Coding RNA 2698) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02698 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02698 Gene

Genomics for LINC02698 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02698 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J115659 Promoter 1.2 UCNEbase Ensembl 600.7 +0.6 633 1.6 ZIC2 PATZ1 EZH2 ZNF600 ZNF341 ZNF561 SP2 EGR1 ZBTB48 ZBTB26 ENSG00000279771 LINC02698 ENSG00000279818 CADM1
GH11J115665 Enhancer 0.7 Ensembl ENCODE CraniofacialAtlas 0.4 +6.4 6433 0.8 CTCF RAD21 ENSG00000279771 LINC02698 ENSG00000279818 CADM1
GH11J115676 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.4 +17.7 17681 1.9 RFX1 SCRT2 RAD21 BMI1 ENSG00000279771 LINC02698 ENSG00000279818 CADM1
GH11J115670 Enhancer 0.6 Ensembl 0.4 +11.7 11733 1.4 PRDM10 ZIC2 ZNF600 ZBTB44 OSR2 ZFHX2 POLR2A SPI1 RCOR1 GLIS1 LINC02698 ENSG00000279771 ENSG00000279818 CADM1
GH11J115647 Enhancer 0.6 ENCODE CraniofacialAtlas 0.4 -13.4 -13385 1 RFX1 POLR2A SMARCA4 ENSG00000260254 LINC02698 ENSG00000279771 CADM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02698 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02698 Gene

Genomic Locations for LINC02698 Gene
chr11:115,659,168-115,916,497
(GRCh38/hg38)
Size:
257,330 bases
Orientation:
Plus strand
chr11:115,530,376-115,713,864
(GRCh37/hg19)
Size:
183,489 bases
Orientation:
Plus strand

Genomic View for LINC02698 Gene

Genes around LINC02698 on UCSC Golden Path with GeneCards custom track
LINC02698 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02698 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02698 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02698 Gene

Proteins for LINC02698 Gene

Post-translational modifications for LINC02698 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02698 Gene

Domains & Families for LINC02698 Gene

Gene Families for LINC02698 Gene

genes like me logo Genes that share domains with LINC02698: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02698 Gene

Function for LINC02698 Gene

Phenotypes From GWAS Catalog for LINC02698 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02698 Gene

Localization for LINC02698 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02698 Gene

Pathways & Interactions for LINC02698 Gene

PathCards logo

SuperPathways for LINC02698 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02698 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02698 Gene

Drugs & Compounds for LINC02698 Gene

No Compound Related Data Available

Transcripts for LINC02698 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02698 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000A7F2D_9606 lncRNA 574 5

HGNC: 54212,

Ensembl: ENST00000539305 (view in UCSC) ,

LncBook: HSALNT0181507,

LNCipedia: lnc-APOC3-6:13,

NONCODE: NONHSAT024316.2,

URS00009B4DDC_9606 lncRNA 574 2

LncBook: HSALNT0181508,

NONCODE: NONHSAT159694.1,

URS0000D58F9B_9606 lncRNA 9218 1

LNCipedia: lnc-APOC3-6:12,

URS00009ACF9E_9606 lncRNA 2250 1

NONCODE: NONHSAT159693.1,

URS0000D5BFC4_9606 lncRNA 1361 1

LNCipedia: lnc-APOC3-6:9,

LINC02698 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02698 Gene

No ASD Table

Relevant External Links for LINC02698 Gene

GeneLoc Exon Structure for
LINC02698

No data available for mRNA/cDNA for LINC02698 Gene

Expression for LINC02698 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02698 Gene

Orthologs for LINC02698 Gene

Evolution for LINC02698 Gene

ENSEMBL:
Gene Tree for LINC02698 (if available)
TreeFam:
Gene Tree for LINC02698 (if available)

No data available for Orthologs for LINC02698 Gene

Paralogs for LINC02698 Gene

No data available for Paralogs for LINC02698 Gene

Variants for LINC02698 Gene

Additional dbSNP identifiers (rs#s) for LINC02698 Gene

Additional Variant Information for LINC02698 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02698

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02698 Gene

Disorders for LINC02698 Gene

Additional Disease Information for LINC02698

No disorders were found for LINC02698 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02698 Gene

Publications for LINC02698 Gene

No publications were found for LINC02698 Gene.

No data available for Mastermind for LINC02698 Gene

Products for LINC02698 Gene

Sources for LINC02698 Gene