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Aliases for LINC02697 Gene

Subcategory (RNA class) for LINC02697 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02697 Gene

  • Long Intergenic Non-Protein Coding RNA 2697 2 3
  • Novel Transcript 5
  • AP003062.1 5

External Ids for LINC02697 Gene

Summaries for LINC02697 Gene

GeneCards Summary for LINC02697 Gene

LINC02697 (Long Intergenic Non-Protein Coding RNA 2697) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02697 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02697 Gene

Genomics for LINC02697 Gene

GeneHancer (GH) Regulatory Elements for LINC02697 Gene

Promoters and enhancers for LINC02697 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J134948 Enhancer 1 Ensembl ENCODE dbSUPER 606.7 -0.7 -684 4.8 ZNF600 ZIC2 CEBPB ZBTB20 ZBTB17 EP300 STAT1 ZNF366 JUND JUN LINC02697 LINC02684 GC11M134901
GH11J134941 Enhancer 0.8 Ensembl dbSUPER 6 -9.5 -9484 5.2 CTCF ELF3 ZIC2 SCRT2 SCRT1 POLR2A GABPB1 RAD21 ELF1 LINC02684 LINC02697 GC11M134901
GH11J134988 Enhancer 0.5 Ensembl dbSUPER 5.6 +38.0 38016 0.6 MNT GC11P134990 LINC02684 LINC02697 ENSG00000279046
GH11J135008 Enhancer 0.5 Ensembl ENCODE 5.6 +57.0 57016 1.8 RCOR1 LINC02717 LINC02684 LINC02697 LOC105369587
GH11J134993 Enhancer 0.6 ENCODE dbSUPER 4.8 +44.2 44239 3.3 POLR2A NANOG LINC02684 LINC02697 GC11P134990 GC11M134998
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02697 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02697 Gene

Genomic Locations for LINC02697 Gene
chr11:134,950,485-134,951,568
(GRCh38/hg38)
Size:
1,084 bases
Orientation:
Plus strand
chr11:134,820,602-134,821,462
(GRCh37/hg19)
Size:
861 bases
Orientation:
Plus strand

Genomic View for LINC02697 Gene

Genes around LINC02697 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02697 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02697 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02697 Gene

Proteins for LINC02697 Gene

Post-translational modifications for LINC02697 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02697 Gene

Domains & Families for LINC02697 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02697 Gene

Function for LINC02697 Gene

Phenotypes From GWAS Catalog for LINC02697 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02697 Gene

Localization for LINC02697 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02697 Gene

Pathways & Interactions for LINC02697 Gene

PathCards logo

SuperPathways for LINC02697 Gene

No Data Available

Interacting Proteins for LINC02697 Gene

Gene Ontology (GO) - Biological Process for LINC02697 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02697 Gene

Drugs & Compounds for LINC02697 Gene

No Compound Related Data Available

Transcripts for LINC02697 Gene

mRNA/cDNA for LINC02697 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02697 Gene

No ASD Table

Relevant External Links for LINC02697 Gene

GeneLoc Exon Structure for
LINC02697
ECgene alternative splicing isoforms for
LINC02697

Expression for LINC02697 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02697 Gene

Orthologs for LINC02697 Gene

Evolution for LINC02697 Gene

ENSEMBL:
Gene Tree for LINC02697 (if available)
TreeFam:
Gene Tree for LINC02697 (if available)

No data available for Orthologs for LINC02697 Gene

Paralogs for LINC02697 Gene

No data available for Paralogs for LINC02697 Gene

Variants for LINC02697 Gene

Sequence variations from dbSNP and Humsavar for LINC02697 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1006535559 -- 134,948,510(+) A/T upstream_transcript_variant
rs1008647517 -- 134,952,057(+) A/G downstream_transcript_variant
rs1009093506 -- 134,951,868(+) T/C downstream_transcript_variant
rs1011556314 -- 134,950,045(+) T/C upstream_transcript_variant
rs1012375166 -- 134,950,831(+) C/T non_coding_transcript_variant

Variation tolerance for LINC02697 Gene

Gene Damage Index Score: 11.73; 93.29% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC02697 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02697

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC02697 Gene

Disorders for LINC02697 Gene

No disorders were found for LINC02697 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02697 Gene

Publications for LINC02697 Gene

No publications were found for LINC02697 Gene.

No data available for External Links for LINC02697 Gene

Products for LINC02697 Gene

Sources for LINC02697 Gene

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