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Aliases for LINC02696 Gene

Subcategory (RNA class) for LINC02696 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02696 Gene

  • Long Intergenic Non-Protein Coding RNA 2696 2 3
  • Novel Transcript 5
  • AC103736.1 5

External Ids for LINC02696 Gene

Summaries for LINC02696 Gene

GeneCards Summary for LINC02696 Gene

LINC02696 (Long Intergenic Non-Protein Coding RNA 2696) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02696 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02696 Gene

Genomics for LINC02696 Gene

GeneHancer (GH) Regulatory Elements for LINC02696 Gene

Promoters and enhancers for LINC02696 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J045354 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 622 +0.4 429 2 SIX5 ZNF148 NFRKB YY1 ELF1 CREM MZF1 ZNF639 CREB1 POLR2A LINC02696 CHST1 ENSG00000254497 LINC02690 SYT13 LINC02687
GH11J046241 Enhancer 1.6 FANTOM5 ENCODE dbSUPER 29.1 +887.7 887683 3.9 SP1 CC2D1A ZFX ZKSCAN8 CBFA2T2 ZNF148 POLR2A MLLT1 CEBPG CSDE1 GC11P046245 ENSG00000270060 DDB2 LINC02696 ZNF408 MDK ENSG00000244313 AMBRA1 LINC02489 CREB3L1
GH11J044976 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 21.4 -376.4 -376382 5.4 ZNF473 NFIB ZSCAN21 IKZF1 ELF1 SP1 PRDM1 ZNF680 FOSL2 CREB1 LINC02696 EXT2 MAPK8IP1 SYT13 TSPAN18 GC11P044981 LINC02685
GH11J045798 Enhancer 1 Ensembl ENCODE 16.9 +443.8 443826 1.1 ELF3 CEBPG SP1 ZNF644 RXRA PRDM12 CEBPA GATAD2A FOXA2 ZNF140 AMBRA1 LINC02696 ZNF408 MDK SLC35C1 LINC02716
GH11J045371 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 10.6 +16.3 16330 1 SP1 CTCF RAD21 RXRA REST POLR2A ZNF501 SCRT2 DEK ZBTB17 LINC02687 CHST1 LINC02696 ENSG00000254651
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02696 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02696 Gene

Genomic Locations for LINC02696 Gene
chr11:45,355,371-45,366,121
(GRCh38/hg38)
Size:
10,751 bases
Orientation:
Plus strand
chr11:45,376,922-45,387,672
(GRCh37/hg19)
Size:
10,751 bases
Orientation:
Plus strand

Genomic View for LINC02696 Gene

Genes around LINC02696 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02696 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02696 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02696 Gene

Proteins for LINC02696 Gene

Post-translational modifications for LINC02696 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02696 Gene

Domains & Families for LINC02696 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02696 Gene

Function for LINC02696 Gene

Phenotypes From GWAS Catalog for LINC02696 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02696 Gene

Localization for LINC02696 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02696 Gene

Pathways & Interactions for LINC02696 Gene

PathCards logo

SuperPathways for LINC02696 Gene

No Data Available

Interacting Proteins for LINC02696 Gene

Gene Ontology (GO) - Biological Process for LINC02696 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02696 Gene

Drugs & Compounds for LINC02696 Gene

No Compound Related Data Available

Transcripts for LINC02696 Gene

mRNA/cDNA for LINC02696 Gene

(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02696 Gene

No ASD Table

Relevant External Links for LINC02696 Gene

GeneLoc Exon Structure for
LINC02696
ECgene alternative splicing isoforms for
LINC02696

Expression for LINC02696 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02696 Gene

Orthologs for LINC02696 Gene

Evolution for LINC02696 Gene

ENSEMBL:
Gene Tree for LINC02696 (if available)
TreeFam:
Gene Tree for LINC02696 (if available)

No data available for Orthologs for LINC02696 Gene

Paralogs for LINC02696 Gene

No data available for Paralogs for LINC02696 Gene

Variants for LINC02696 Gene

Sequence variations from dbSNP and Humsavar for LINC02696 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000076831 -- 45,355,884(+) C/G intron_variant, non_coding_transcript_variant
rs1001256852 -- 45,354,190(+) T/A upstream_transcript_variant
rs1002824661 -- 45,354,560(+) G/A/C upstream_transcript_variant
rs1002881462 -- 45,355,318(+) G/T upstream_transcript_variant
rs1003986151 -- 45,353,375(+) C/T upstream_transcript_variant

Additional Variant Information for LINC02696 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02696

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02696 Gene

Disorders for LINC02696 Gene

No disorders were found for LINC02696 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02696 Gene

Publications for LINC02696 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

No data available for External Links for LINC02696 Gene

Products for LINC02696 Gene

Sources for LINC02696 Gene

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