LINC02690 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2690

GC11M061378
GIFtS:
7
See more...

Aliases for LINC02690 Gene

Subcategory (RNA class) for LINC02690 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02690 Gene

  • Long Intergenic Non-Protein Coding RNA 2690 2 3 5
  • LINC02690 2 5
  • NONHSAG008180.2 91
  • CTD-2210P24.3 3
  • HSALNG0083947 164
  • Lnc-CHST1-4 165

External Ids for LINC02690 Gene

Previous GeneCards Identifiers for LINC02690 Gene

  • GC11M055886
  • GC11M056130
  • GC11M056304
  • GC11M059869

Summaries for LINC02690 Gene

GeneCards Summary for LINC02690 Gene

LINC02690 (Long Intergenic Non-Protein Coding RNA 2690) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02690 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02690 Gene

Genomics for LINC02690 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02690 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J045751 Enhancer 0.5 ENCODE 600.7 +0.6 614 0.2 RFX1 RFX5 RAD21 BMI1 YY1 NR2F2 KDM1A CSDE1 LINC02690 LINC02716 piR-41512 lnc-SLC35C1-7 SLC35C1 CHST1
GH11J045354 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 10 +396.7 396729 1.4 CREB1 PRDM10 ZNF629 RFX1 SIX5 KDM1A ETV6 JUND GABPA POLR2A LINC02696 CHST1 ENSG00000254497 LINC02690 SYT13 LINC02687
GH11J045606 Enhancer 0.8 Ensembl ENCODE 10.4 +143.2 143178 5.8 TEAD4 RFX1 POLR2A RAD21 BMI1 TSC22D4 YBX1 ZBTB17 NR2F2 SPI1 CHST1 ENSG00000255091 LINC02690 ENSG00000254497 LOC105376656 piR-46012 SYT13
GH11J045706 Enhancer 0.6 FANTOM5 Ensembl 11.6 +45.5 45478 1.6 PRDM1 SCRT2 ZNF10 EZH2 SCRT1 piR-36506 piR-36553 piR-33553 piR-31366 piR-37390 piR-37733 piR-34194 piR-31681 piR-37975 piR-39581
GH11J045723 Enhancer 0.4 Ensembl ENCODE 11.7 +28.5 28478 0.8 NR2C1 ENSG00000254519 LOC100507384 piR-33281 piR-36818 piR-36861 piR-31276 piR-39104 piR-34086 piR-39900 piR-41761
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02690 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02690 Gene

Genomic Locations for LINC02690 Gene
chr11:45,749,454-45,752,279
(GRCh38/hg38)
Size:
2,826 bases
Orientation:
Minus strand
chr11:45,772,374-45,773,422
(GRCh37/hg19)
Size:
1,049 bases
Orientation:
Minus strand

Genomic View for LINC02690 Gene

Genes around LINC02690 on UCSC Golden Path with GeneCards custom track
LINC02690 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02690 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02690 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02690 Gene

Proteins for LINC02690 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02690 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02690 Gene

Domains & Families for LINC02690 Gene

Gene Families for LINC02690 Gene

HGNC:
genes like me logo Genes that share domains with LINC02690: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02690 Gene

Function for LINC02690 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02690 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02690 Gene

Localization for LINC02690 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02690 Gene

Pathways & Interactions for LINC02690 Gene

PathCards logo

SuperPathways for LINC02690 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02690 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02690 Gene

Drugs & Compounds for LINC02690 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02690 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02690 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001018DB_9606 lncRNA 534 4

Ensembl: ENST00000531982 (view in UCSC) ,

LncBook: HSALNT0174888,

LNCipedia: lnc-CHST1-4:1,

NONCODE: NONHSAT021138.2,

URS0000EF490F_9606 lncRNA 1853 2

HGNC: 54194,

Ensembl: ENST00000666193 (view in UCSC) ,

URS0000EF6B30_9606 lncRNA 942 1

Ensembl: ENST00000667281 (view in UCSC) ,

URS0000EEB6E3_9606 lncRNA 444 1

Ensembl: ENST00000661509 (view in UCSC) ,

URS000047893A_9606 lncRNA 166 1

Ensembl: ENST00000526225 (view in UCSC) ,

LINC02690 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02690 Gene

No ASD Table

Relevant External Links for LINC02690 Gene

GeneLoc Exon Structure for
LINC02690

No data available for mRNA/cDNA for LINC02690 Gene

Expression for LINC02690 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02690 Gene

Orthologs for LINC02690 Gene

Evolution for LINC02690 Gene

ENSEMBL:
Gene Tree for LINC02690 (if available)
TreeFam:
Gene Tree for LINC02690 (if available)

No data available for Orthologs for LINC02690 Gene

Paralogs for LINC02690 Gene

No data available for Paralogs for LINC02690 Gene

Variants for LINC02690 Gene

Additional dbSNP identifiers (rs#s) for LINC02690 Gene

Additional Variant Information for LINC02690 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02690

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02690 Gene

Disorders for LINC02690 Gene

No disorders were found for LINC02690 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02690 Gene

Publications for LINC02690 Gene

No publications were found for LINC02690 Gene.

No data available for Mastermind for LINC02690 Gene

Products for LINC02690 Gene

Sources for LINC02690 Gene