Aliases for LINC02689 Gene

Subcategory (RNA class) for LINC02689 Gene

lncRNA

Aliases for LINC02689 Gene

  • Long Intergenic Non-Protein Coding RNA 2689 2 3 5
  • LINC02689 2 5

External Ids for LINC02689 Gene

Summaries for LINC02689 Gene

GeneCards Summary for LINC02689 Gene

LINC02689 (Long Intergenic Non-Protein Coding RNA 2689) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02689 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02689 Gene

Genomics for LINC02689 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02689 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J001351 Enhancer 0.9 Ensembl ENCODE 600.7 +1.2 1172 0.6 ARHGAP35 POLR2A ELF4 GTF2F1 SCRT2 GTF2E2 CBX3 MTA3 ZBED1 KDM4B LINC02689 TOLLIP-AS1 TOLLIP piR-37170-012 BRSK2
GH11J001352 Enhancer 0.7 ENCODE 600.7 +1.6 1559 0.2 ARHGAP35 POLR2A ELF4 GTF2F1 SCRT2 GTF2E2 CBX3 MTA3 ZBED1 KDM4B LINC02689 BRSK2 piR-37170-012 TOLLIP
GH11J001348 Enhancer 0.7 Ensembl CraniofacialAtlas 600.7 -1.0 -1036 2.2 ZNF316 ZFHX2 POLR2A GLIS1 SMARCA4 KLF1 EGR2 LINC02689 TOLLIP TOLLIP-AS1 ENSG00000254739 ENSG00000287935 BRSK2
GH11J001356 Enhancer 0.7 Ensembl 0.4 +6.0 5994 0.6 ZNF512 PRDM1 SOX6 EGR1 CTBP1 NCOR1 ZFHX2 BCOR TAL1 PHF20 TOLLIP-AS1 LINC02689 piR-37170-012 BRSK2 TOLLIP
GH11J001342 Enhancer 0.5 Ensembl 0.4 -8.3 -8307 1.6 DPF2 CTCF ZKSCAN1 ELF1 RAD21 CHD4 TOLLIP-AS1 ENSG00000287935 LINC02689 TOLLIP BRSK2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02689 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02689 Gene

Genomic Locations for LINC02689 Gene
chr11:1,350,307-1,365,198
(GRCh38/hg38)
Size:
14,892 bases
Orientation:
Plus strand

Genomic View for LINC02689 Gene

Genes around LINC02689 on UCSC Golden Path with GeneCards custom track
LINC02689 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02689 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02689 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02689 Gene

Proteins for LINC02689 Gene

Post-translational modifications for LINC02689 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02689 Gene

Domains & Families for LINC02689 Gene

Gene Families for LINC02689 Gene

genes like me logo Genes that share domains with LINC02689: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02689 Gene

Function for LINC02689 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02689 Gene

Localization for LINC02689 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02689 Gene

Pathways & Interactions for LINC02689 Gene

PathCards logo

SuperPathways for LINC02689 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02689 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02689 Gene

Drugs & Compounds for LINC02689 Gene

No Compound Related Data Available

Transcripts for LINC02689 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02689 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000DB9A61_9606 lncRNA 1458 2

HGNC: 54192,

Ensembl: ENST00000650218 (view in UCSC) ,

LINC02689 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02689 Gene

No ASD Table

Relevant External Links for LINC02689 Gene

GeneLoc Exon Structure for
LINC02689

No data available for mRNA/cDNA for LINC02689 Gene

Expression for LINC02689 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02689 Gene

Orthologs for LINC02689 Gene

Evolution for LINC02689 Gene

ENSEMBL:
Gene Tree for LINC02689 (if available)
TreeFam:
Gene Tree for LINC02689 (if available)

No data available for Orthologs for LINC02689 Gene

Paralogs for LINC02689 Gene

No data available for Paralogs for LINC02689 Gene

Variants for LINC02689 Gene

Additional dbSNP identifiers (rs#s) for LINC02689 Gene

Additional Variant Information for LINC02689 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02689

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02689 Gene

Disorders for LINC02689 Gene

No disorders were found for LINC02689 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02689 Gene

Publications for LINC02689 Gene

No publications were found for LINC02689 Gene.

No data available for Mastermind for LINC02689 Gene

Products for LINC02689 Gene

Sources for LINC02689 Gene