Aliases for LINC02688 Gene

Subcategory (RNA class) for LINC02688 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC02688 Gene

  • Long Intergenic Non-Protein Coding RNA 2688 2 3 5
  • LINC02688 2 5
  • NONHSAG007368.2 91
  • Lnc-MUC2-1 165

External Ids for LINC02688 Gene

Additional External Ids for LINC02688 Gene

Summaries for LINC02688 Gene

GeneCards Summary for LINC02688 Gene

LINC02688 (Long Intergenic Non-Protein Coding RNA 2688) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02688 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02688 Gene

Genomics for LINC02688 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02688 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J001050 Enhancer 1.2 Ensembl ENCODE dbSUPER 606.6 +1.8 1810 1.2 HNRNPL GATAD2A CTCF ZNF692 LARP7 ZNF143 REST RAD21 IRF2 ZNF501 LINC02688 MUC2 AP2A2 PIDD1 RPLP2 SLC25A22 CEND1 ENSG00000255142 LMNTD2 piR-50226
GH11J001047 Promoter/Enhancer 0.9 EPDnew Ensembl dbSUPER 606.7 -0.4 -390 2.8 CTCF CREB1 BHLHE40 RAD21 LINC02688 AP2A2 PIDD1 RPLP2 CEND1 SLC25A22 CD151 piR-50443-056 MUC6 lnc-AP2A2-2
GH11J000951 Enhancer 1.2 Ensembl ENCODE dbSUPER 7.1 -93.8 -93831 8.4 ARHGAP35 GATAD2A NFKBIZ PHB2 ZSCAN4 PKNOX1 RXRB REST SP1 GABPA LINC02688 POLR2L AP2A2 LOC171391 RNU6-1025P MN298678-014 MUC6
GH11J000930 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 6.8 -114.6 -114587 7.9 GATAD2A PRDM10 JUND PKNOX1 RXRB SP1 DPF2 CEBPA SCRT2 NFE2 LINC02688 POLR2L AP2A2 IRF7 LRRC56 RF00017-842 MUC6
GH11J001052 Enhancer 0.8 Ensembl ENCODE dbSUPER 6.3 +5.1 5056 3.1 MAZ STAT1 RCOR1 TCF7L2 VEZF1 KLF1 ZKSCAN8 MUC2 LINC02688 AP2A2 piR-50226 MUC6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02688 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LINC02688

Genomic Locations for LINC02688 Gene

Genomic Locations for LINC02688 Gene
chr11:1,049,391-1,057,094
(GRCh38/hg38)
Size:
7,704 bases
Orientation:
Plus strand
chr11:1,049,880-1,055,284
(GRCh37/hg19)
Size:
5,405 bases
Orientation:
Plus strand

Genomic View for LINC02688 Gene

Genes around LINC02688 on UCSC Golden Path with GeneCards custom track
LINC02688 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02688 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02688 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02688 Gene

Proteins for LINC02688 Gene

Post-translational modifications for LINC02688 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02688 Gene

Domains & Families for LINC02688 Gene

Gene Families for LINC02688 Gene

genes like me logo Genes that share domains with LINC02688: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02688 Gene

Function for LINC02688 Gene

Phenotypes From GWAS Catalog for LINC02688 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02688 Gene

Localization for LINC02688 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02688 Gene

Pathways & Interactions for LINC02688 Gene

PathCards logo

SuperPathways for LINC02688 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02688 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02688 Gene

Drugs & Compounds for LINC02688 Gene

No Compound Related Data Available

Transcripts for LINC02688 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02688 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000077D862_9606 lncRNA 3139 3

Ensembl: ENST00000617529 (view in UCSC) , ENST00000627955 (view in UCSC) , ENST00000636387 (view in UCSC) ,

LNCipedia: lnc-MUC2-1:4,

NONCODE: NONHSAT017376.2,

URS0000E60B51_9606 lncRNA 1109 2

HGNC: 54184,

RefSeq: NR_160890,

URS0000774EA3_9606 lncRNA 1094 2

Ensembl: ENST00000534584 (view in UCSC) , ENST00000625571 (view in UCSC) ,

LNCipedia: lnc-MUC2-1:5,

URS00008C115E_9606 lncRNA 2928 2

LNCipedia: lnc-MUC2-1:1,

NONCODE: NONHSAT017375.2,

URS00009B0D91_9606 lncRNA 1068 2

LNCipedia: lnc-MUC2-1:2,

NONCODE: NONHSAT017374.2,

LINC02688 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02688 Gene

1 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02688 Gene

No ASD Table

Relevant External Links for LINC02688 Gene

GeneLoc Exon Structure for
LINC02688

Expression for LINC02688 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02688

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02688 Gene

Orthologs for LINC02688 Gene

Evolution for LINC02688 Gene

ENSEMBL:
Gene Tree for LINC02688 (if available)
TreeFam:
Gene Tree for LINC02688 (if available)

No data available for Orthologs for LINC02688 Gene

Paralogs for LINC02688 Gene

No data available for Paralogs for LINC02688 Gene

Variants for LINC02688 Gene

Additional dbSNP identifiers (rs#s) for LINC02688 Gene

Additional Variant Information for LINC02688 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02688

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02688 Gene

Disorders for LINC02688 Gene

Additional Disease Information for LINC02688

No disorders were found for LINC02688 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02688 Gene

Publications for LINC02688 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

No data available for Mastermind for LINC02688 Gene

Products for LINC02688 Gene

Sources for LINC02688 Gene