Aliases for LINC02687 Gene

Subcategory (RNA class) for LINC02687 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC02687 Gene

  • Long Intergenic Non-Protein Coding RNA 2687 2 3 5
  • LINC02687 2 5
  • NONHSAG008165.2 91
  • Lnc-PRDM11-4 165

External Ids for LINC02687 Gene

Summaries for LINC02687 Gene

GeneCards Summary for LINC02687 Gene

LINC02687 (Long Intergenic Non-Protein Coding RNA 2687) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02687 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02687 Gene

Genomics for LINC02687 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02687 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J045371 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.1 128 0.6 CTCF TEAD4 POLR2A REST RAD21 ZNF501 SCRT2 SMC3 ZBTB17 DEK LINC02687 CHST1 LINC02696 ENSG00000254651 SYT13
GH11J045369 Enhancer 0.3 Ensembl dbSUPER 600.7 -1.7 -1696 0.2 LINC02687 LINC02696 CHST1 SYT13
GH11J045354 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -15.8 -15847 1.4 CREB1 PRDM10 ZNF629 RFX1 SIX5 KDM1A ETV6 JUND GABPA POLR2A LINC02696 CHST1 ENSG00000254497 LINC02690 SYT13 LINC02687
GH11J045374 Enhancer 0.9 FANTOM5 Ensembl ENCODE 0.7 +3.7 3703 1.8 ZNF189 SPI1 RAD21 HNF4A RXRA EZH2 SP1 LINC02696 ENSG00000255091 CHST1 CRY2 LINC02687 ENSG00000254651 SYT13
GH11J045365 Enhancer 0.7 Ensembl dbSUPER 0.7 -4.7 -4696 1.4 YY1 JUND NR2F2 HNF4A RXRA ATF2 RAD21 SP1 LINC02696 LINC02716 ENSG00000255091 CHST1 LINC02687 SYT13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02687 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02687 Gene

Genomic Locations for LINC02687 Gene
chr11:45,371,397-45,388,511
(GRCh38/hg38)
Size:
17,115 bases
Orientation:
Plus strand
chr11:45,392,948-45,410,059
(GRCh37/hg19)
Size:
17,112 bases
Orientation:
Plus strand

Genomic View for LINC02687 Gene

Genes around LINC02687 on UCSC Golden Path with GeneCards custom track
LINC02687 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02687 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02687 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02687 Gene

Proteins for LINC02687 Gene

Post-translational modifications for LINC02687 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02687 Gene

Domains & Families for LINC02687 Gene

Gene Families for LINC02687 Gene

genes like me logo Genes that share domains with LINC02687: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02687 Gene

Function for LINC02687 Gene

Phenotypes From GWAS Catalog for LINC02687 Gene

Phenotypes for LINC02687 Gene

genes like me logo Genes that share phenotypes with LINC02687: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02687 Gene

Localization for LINC02687 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02687 Gene

Pathways & Interactions for LINC02687 Gene

PathCards logo

SuperPathways for LINC02687 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02687 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02687 Gene

Drugs & Compounds for LINC02687 Gene

No Compound Related Data Available

Transcripts for LINC02687 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02687 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004CCD79_9606 lncRNA 2597 5

HGNC: 54187,

RefSeq: NR_122071,

Ensembl: ENST00000528390 (view in UCSC) ,

LNCipedia: lnc-PRDM11-4:1,

NONCODE: NONHSAT019024.2,

URS0000EF2D69_9606 lncRNA 972 1

Ensembl: ENST00000664257 (view in UCSC) ,

URS00008B8FCC_9606 lncRNA 713 1

LNCipedia: lnc-PRDM11-4:2,

LINC02687 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02687 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02687 Gene

No ASD Table

Relevant External Links for LINC02687 Gene

GeneLoc Exon Structure for
LINC02687

Expression for LINC02687 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02687

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02687 Gene

Orthologs for LINC02687 Gene

Evolution for LINC02687 Gene

ENSEMBL:
Gene Tree for LINC02687 (if available)
TreeFam:
Gene Tree for LINC02687 (if available)

No data available for Orthologs for LINC02687 Gene

Paralogs for LINC02687 Gene

No data available for Paralogs for LINC02687 Gene

Variants for LINC02687 Gene

Additional dbSNP identifiers (rs#s) for LINC02687 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02687 Gene

Variant ID Type Subtype PubMed ID
nsv467869 CNV loss 19166990
nsv554185 CNV loss 21841781

Additional Variant Information for LINC02687 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02687

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02687 Gene

Disorders for LINC02687 Gene

Additional Disease Information for LINC02687

No disorders were found for LINC02687 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02687 Gene

Publications for LINC02687 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02687 Gene

Products for LINC02687 Gene

Sources for LINC02687 Gene