Aliases for LINC02685 Gene

Subcategory (RNA class) for LINC02685 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02685 Gene

  • Long Intergenic Non-Protein Coding RNA 2685 2 3 5
  • LINC02685 2 5
  • NONHSAG008157.2 91
  • HSALNG0083903 164
  • Lnc-TSPAN18-1 165

External Ids for LINC02685 Gene

Summaries for LINC02685 Gene

GeneCards Summary for LINC02685 Gene

LINC02685 (Long Intergenic Non-Protein Coding RNA 2685) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02685 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02685 Gene

Genomics for LINC02685 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02685 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J044973 Enhancer 0.6 ENCODE dbSUPER 600.7 +0.5 518 0.6 ZIC2 POLR2A RAD21 CEBPB LINC02685 LOC105376649 lnc-TP53I11-1 TP53I11 PRDM11
GH11J044976 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +5.2 5219 5.4 CREB1 CTCF KDM1A ZHX2 ZNF300 FOXA1 PRDM1 ZNF776 ZSCAN4 REST LINC02696 EXT2 MAPK8IP1 SYT13 TSPAN18 LOC105376649 LINC02685 TP53I11 lnc-TP53I11-2 MN309349
GH11J044964 Enhancer 0.7 ENCODE CraniofacialAtlas dbSUPER 0.4 -8.8 -8812 1.8 ZNF664 SMARCA4 HSALNG0083902 PRDM11 ENSG00000254497 LINC02685 TP53I11
GH11J044965 Enhancer 0.3 FANTOM5 dbSUPER 0.4 -7.6 -7604 0.4 PRDM11 ENSG00000254497 HSALNG0083902 LINC02685 TP53I11
GH11J044967 Enhancer 0.3 dbSUPER 0.4 -5.7 -5673 1.8 ZNF664 PRDM11 ENSG00000254497 HSALNG0083902 LINC02685 TP53I11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02685 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02685 Gene

Genomic Locations for LINC02685 Gene
chr11:44,973,770-44,978,028
(GRCh38/hg38)
Size:
4,259 bases
Orientation:
Plus strand

Genomic View for LINC02685 Gene

Genes around LINC02685 on UCSC Golden Path with GeneCards custom track
LINC02685 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02685 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02685 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02685 Gene

Proteins for LINC02685 Gene

Post-translational modifications for LINC02685 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02685 Gene

Domains & Families for LINC02685 Gene

Gene Families for LINC02685 Gene

genes like me logo Genes that share domains with LINC02685: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02685 Gene

Function for LINC02685 Gene

Phenotypes From GWAS Catalog for LINC02685 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02685 Gene

Localization for LINC02685 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02685 Gene

Pathways & Interactions for LINC02685 Gene

PathCards logo

SuperPathways for LINC02685 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02685 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02685 Gene

Drugs & Compounds for LINC02685 Gene

No Compound Related Data Available

Transcripts for LINC02685 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02685 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A793_9606 lncRNA 1238 2

HGNC: 27350,

RefSeq: NR_026681,

URS0000EF5F41_9606 lncRNA 1592 1

Ensembl: ENST00000670262 (view in UCSC) ,

URS0000EF6A70_9606 lncRNA 1371 1

Ensembl: ENST00000525114 (view in UCSC) ,

URS0000EF48FE_9606 lncRNA 1273 1

Ensembl: ENST00000654603 (view in UCSC) ,

URS0000EED175_9606 lncRNA 1256 1

Ensembl: ENST00000670250 (view in UCSC) ,

LINC02685 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02685 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02685 Gene

No ASD Table

Relevant External Links for LINC02685 Gene

GeneLoc Exon Structure for
LINC02685

Expression for LINC02685 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02685

SOURCE GeneReport for Unigene cluster for LINC02685 Gene:

Hs.551656
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02685 Gene

Orthologs for LINC02685 Gene

Evolution for LINC02685 Gene

ENSEMBL:
Gene Tree for LINC02685 (if available)
TreeFam:
Gene Tree for LINC02685 (if available)

No data available for Orthologs for LINC02685 Gene

Paralogs for LINC02685 Gene

No data available for Paralogs for LINC02685 Gene

Variants for LINC02685 Gene

Additional dbSNP identifiers (rs#s) for LINC02685 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02685 Gene

Variant ID Type Subtype PubMed ID
nsv482977 CNV gain 15286789

Additional Variant Information for LINC02685 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02685

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02685 Gene

Disorders for LINC02685 Gene

Additional Disease Information for LINC02685

No disorders were found for LINC02685 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02685 Gene

Publications for LINC02685 Gene

No publications were found for LINC02685 Gene.

No data available for Mastermind for LINC02685 Gene

Products for LINC02685 Gene

Sources for LINC02685 Gene