Aliases for LINC02684 Gene

Data sources for LINC02684 Gene:

Subcategory (RNA class) for LINC02684 Gene

lncRNA

Aliases for LINC02684 Gene

External Ids for LINC02684 Gene

Summaries for LINC02684 Gene

GeneCards Summary for LINC02684 Gene

LINC02684 (Long Intergenic Non-Protein Coding RNA 2684) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02684 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02684 Gene

Genomics for LINC02684 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02684 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J134989 Enhancer 0.7 Ensembl ENCODE dbSUPER 13.7 +83.2 83247 6.9 YY1 NANOG POLR2A LINC02684 LINC02697 piR-49097-024 HSALNG0088426 LOC105369587 LINC02717 B3GAT1
GH11J135033 Enhancer 0.7 Ensembl ENCODE 13.2 +42.7 42725 0.9 CTCF BHLHE40 ZIC2 YY1 SMC3 RAD21 ZBTB17 USF2 USF1 ZNF654 LINC02684 HSALNG0088431 HSALNG0088432 B3GAT1
GH11J134948 Enhancer 0.9 Ensembl ENCODE dbSUPER 8.1 +126.2 126198 4.8 ZIC2 CEBPB EP300 JUND GLIS1 ZNF366 ZBTB17 ZBTB20 ZNF600 LINC02697 HSALNG0088422 LINC02684 HSALNG0088423 ENSG00000287251 B3GAT1
GH11J135008 Enhancer 0.5 Ensembl ENCODE 13.2 +68.9 68898 2.2 RCOR1 GATA2 LINC02717 piR-38736-004 LINC02684 LINC02697 LOC105369587 HSALNG0088426 B3GAT1
GH11J134941 Enhancer 0.7 Ensembl dbSUPER 8.9 +134.7 134698 4.2 CTCF ZIC2 GABPB1 SCRT1 ELF3 RAD21 ELF1 LINC02684 LINC02697 HSALNG0088422 ENSG00000287251 piR-30176-001 B3GAT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02684 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02684 Gene

Latest Assembly
chr11:135,058,412-135,076,199
(GRCh38/hg38)
Size:
17,788 bases
Orientation:
Minus strand

Previous Assembly
chr11:134,931,675-134,945,793
(GRCh37/hg19 by Ensembl)
Size:
14,119 bases
Orientation:
Minus strand

Genomic View for LINC02684 Gene

Genes around LINC02684 on UCSC Golden Path with GeneCards custom track
LINC02684 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02684 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02684 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02684 Gene

Proteins for LINC02684 Gene

Post-translational modifications for LINC02684 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02684 Gene

Domains & Families for LINC02684 Gene

Gene Families for LINC02684 Gene

genes like me logo Genes that share domains with LINC02684: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02684 Gene

Function for LINC02684 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02684 Gene

Localization for LINC02684 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02684 Gene

Pathways & Interactions for LINC02684 Gene

PathCards logo

SuperPathways for LINC02684 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02684 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02684 Gene

Drugs & Compounds for LINC02684 Gene

No Compound Related Data Available

Transcripts for LINC02684 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02684 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004B7BCC_9606 lncRNA 717 4

Ensembl: ENST00000532071 (view in UCSC) ,

LncBook: HSALNT0183942,

LNCipedia: lnc-B3GAT1-3:1,

NONCODE: NONHSAT025287.2,

URS0000EF15CE_9606 lncRNA 1855 1

Ensembl: ENST00000657926 (view in UCSC) ,

URS00009B7ED7_9606 lncRNA 714 2

LncBook: HSALNT0183943,

NONCODE: NONHSAT160957.1,

URS0001BE94FC_9606 lncRNA 7727 1

LncBook: HSALNT0183929,

URS0001BEB733_9606 lncRNA 5621 1

LncBook: HSALNT0183941,

LINC02684 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02684 Gene

No ASD Table

Relevant External Links for LINC02684 Gene

GeneLoc Exon Structure for
LINC02684

No data available for mRNA/cDNA for LINC02684 Gene

Expression for LINC02684 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02684 Gene

Orthologs for LINC02684 Gene

Evolution for LINC02684 Gene

ENSEMBL:
Gene Tree for LINC02684 (if available)
TreeFam:
Gene Tree for LINC02684 (if available)

No data available for Orthologs for LINC02684 Gene

Paralogs for LINC02684 Gene

No data available for Paralogs for LINC02684 Gene

Variants for LINC02684 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02684 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02684 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02684

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02684 Gene

Disorders for LINC02684 Gene

No disorders were found for LINC02684 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02684 Gene

Publications for LINC02684 Gene

No publications were found for LINC02684 Gene.

No data available for Mastermind for LINC02684 Gene

Products for LINC02684 Gene

Sources for LINC02684 Gene