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Aliases for LINC02682 Gene
Data sources for LINC02682 Gene:
Subcategory (RNA class) for LINC02682 Gene
lncRNA
Aliases for LINC02682 Gene
- Long Intergenic Non-Protein Coding RNA 2682 (HGNC, NCBI Entrez Gene, Ensembl)
- TCONS_00019584 (HGNC, NCBI Entrez Gene)
- Lnc-SOX6-1 (HGNC, NCBI Entrez Gene)
- NONHSAG007738.2 (NONCODE)
- HSALNG0082882 (LncBook)
- Lnc-INSC-3 (LNCipedia)
- LINC02682 (Ensembl)
External Ids for LINC02682 Gene
- HGNC: 54177
- NCBI Entrez Gene: 105376570
- Ensembl: ENSG00000254661
Summaries for LINC02682 Gene
GeneCards Summary for LINC02682 Gene
LINC02682 (Long Intergenic Non-Protein Coding RNA 2682) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC02682 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02682 Gene
Genomics for LINC02682 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02682 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J015911 | Enhancer | 0.6 | Ensembl ENCODE | 260.9 | +1.6 | 1572 | 3.8 | RAD21 SPI1 CTCF MEIS2 ZBTB17 CEBPB | LINC02682 lnc-SOX6-1 HSALNG0082884 C11orf58 INSC | |
| GH11J015941 | Enhancer | 0.9 | ENCODE CraniofacialAtlas | 8.1 | +30.6 | 30552 | 0.8 | CTCF REST VEZF1 SMC3 YY1 RAD21 BHLHE40 NRF1 RB1 IKZF1 | LINC02682 HSALNG0082884 lnc-SOX6-1 C11orf58 INSC | |
| GH11J015937 | Enhancer | 0.6 | Ensembl ENCODE | 10.6 | +27.6 | 27623 | 1.5 | RAD21 CTCF SP1 | LINC02682 C11orf58 SOX6 lnc-SOX6-1 HSALNG0082884 INSC | |
| GH11J015920 | Enhancer | 0.3 | Ensembl | 11 | +10.7 | 10673 | 1.2 | ZMYM3 EGR2 | LINC02682 lnc-SOX6-1 HSALNG0082884 C11orf58 INSC | |
| GH11J015903 | Enhancer | 0.6 | Ensembl | 0.4 | -6.9 | -6927 | 0.4 | RXRA CTBP1 RARA STAT3 JUND PKNOX1 BHLHE40 HNF4A HNRNPL ESRRA | HSALNG0082881 LINC02682 HSALNG0082880 C11orf58 INSC |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02682 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC02682 Gene
Latest Assembly
- chr11:15,910,528-15,931,127
- (GRCh38/hg38)
- Size:
- 20,600 bases
- Orientation:
- Plus strand
Previous Assembly
- chr11:15,932,503-15,948,989
- (GRCh37/hg19 by Ensembl)
- Size:
- 16,487 bases
- Orientation:
- Plus strand
Genomic View for LINC02682 Gene
Genes around LINC02682 on UCSC Golden Path with GeneCards custom track
LINC02682 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11p15.2 by HGNC
- 11p15.2 by Entrez Gene
- 11p15.2 by Ensembl
LINC02682 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02682 Gene
Proteins for LINC02682 Gene
Post-translational modifications for LINC02682 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC02682 Gene
Domains & Families for LINC02682 Gene
Gene Families for LINC02682 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02682 Gene
Function for LINC02682 Gene
Phenotypes From GWAS Catalog for LINC02682 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02682 Gene
Localization for LINC02682 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02682 Gene
Transcripts for LINC02682 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02682 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000EEF26D_9606 | lncRNA | 1587 | 1 |
Ensembl: ENST00000668376 (view in UCSC) , |
| URS0000EEFD9A_9606 | lncRNA | 1377 | 1 |
Ensembl: ENST00000667221 (view in UCSC) , |
| URS0000EF5D10_9606 | lncRNA | 1372 | 1 |
Ensembl: ENST00000669725 (view in UCSC) , |
| URS0000EF66E5_9606 | lncRNA | 1361 | 1 |
Ensembl: ENST00000670509 (view in UCSC) , |
| URS0000EF4D74_9606 | lncRNA | 1317 | 1 |
Ensembl: ENST00000664817 (view in UCSC) , |
LINC02682 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC02682 Gene
- GeneLoc Exon Structure for
- LINC02682
No data available for mRNA/cDNA for LINC02682 Gene
Expression for LINC02682 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02682 Gene
Orthologs for LINC02682 Gene
No data available for Orthologs for LINC02682 Gene
Paralogs for LINC02682 Gene
No data available for Paralogs for LINC02682 Gene
Variants for LINC02682 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC02682 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02682
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02682 Gene
Disorders for LINC02682 Gene
No disorders were found for LINC02682 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02682 Gene
Publications for LINC02682 Gene
- Lnc-SOX6-1 upregulation correlates with poor risk stratification and worse treatment outcomes, and promotes cell proliferation while inhibits apoptosis in pediatric acute myeloid leukemia. (PMID: 30624855) Guan X … Guo Y (International journal of laboratory hematology 2019) 2 3
No data available for Mastermind for LINC02682 Gene
Products for LINC02682 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02682
- Origene Custom Protein Services for LINC02682
- Browse OriGene Inhibitory RNA Products For LINC02682
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02682
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02682
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02682
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02682
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02682
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02682
Sources for LINC02682 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB