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LINC02682 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 2682

GCID:
GC11P015911
GIFtS:
9
Genes Participants
UDN Logo

Aliases for LINC02682 Gene

Subcategory (RNA class) for LINC02682 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02682 Gene

  • Long Intergenic Non-Protein Coding RNA 2682 2 3
  • Novel Transcript 5
  • TCONS_00019584 3
  • Lnc-SOX6-1 3
  • AC009869.1 5

External Ids for LINC02682 Gene

Summaries for LINC02682 Gene

GeneCards Summary for LINC02682 Gene

LINC02682 (Long Intergenic Non-Protein Coding RNA 2682) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02682 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02682 Gene

Genomics for LINC02682 Gene

GeneHancer (GH) Regulatory Elements for LINC02682 Gene

Promoters and enhancers for LINC02682 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J015911 Enhancer 0.5 Ensembl ENCODE 610.9 +1.1 1129 3.4 ZBTB17 LINC02682 GC11M015966
GH11J015941 Enhancer 0.9 Ensembl ENCODE 8.1 +30.6 30629 1.2 CTCF MLLT1 RAD21 IKZF1 DPF2 IKZF2 ZNF143 REST LARP7 FUS LINC02682 GC11M015966
GH11J015937 Enhancer 0.6 Ensembl ENCODE 10.6 +27.6 27579 1.5 SP1 CTCF LINC02682 C11orf58 SOX6 GC11M015966
GH11J015892 Enhancer 0.9 Ensembl ENCODE 0.4 -17.0 -17030 2.1 SP7 PKNOX1 ZIC2 ATF1 REST LEF1 HDAC1 SOX6 MGA CTBP1 LINC02682 GC11P015776
GH11J015901 Enhancer 0.7 Ensembl ENCODE 0.4 -8.7 -8689 1.4 ESRRA RAD21 FOXA1 EBF1 FOS CTCF LINC02682 GC11P015776
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02682 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02682 Gene

Genomic Locations for LINC02682 Gene
chr11:15,910,572-15,930,917
(GRCh38/hg38)
Size:
20,346 bases
Orientation:
Plus strand
chr11:15,932,503-15,948,989
(GRCh37/hg19)
Size:
16,487 bases
Orientation:
Plus strand

Genomic View for LINC02682 Gene

Genes around LINC02682 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02682 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02682 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02682 Gene

Proteins for LINC02682 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02682 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02682 Gene

Domains & Families for LINC02682 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02682 Gene

Function for LINC02682 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02682 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02682 Gene

Localization for LINC02682 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02682 Gene

Pathways & Interactions for LINC02682 Gene

GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
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SuperPathways for LINC02682 Gene

No Data Available

Interacting Proteins for LINC02682 Gene

Gene Ontology (GO) - Biological Process for LINC02682 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02682 Gene

Drugs & Compounds for LINC02682 Gene

Products:

  1. Drug
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Compound Related Data Available

Transcripts for LINC02682 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC02682 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02682 Gene

No ASD Table

Relevant External Links for LINC02682 Gene

GeneLoc Exon Structure for
LINC02682
ECgene alternative splicing isoforms for
LINC02682

Expression for LINC02682 Gene

Products:

  1. Primer
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02682 Gene

Orthologs for LINC02682 Gene

Evolution for LINC02682 Gene

ENSEMBL:
Gene Tree for LINC02682 (if available)
TreeFam:
Gene Tree for LINC02682 (if available)

No data available for Orthologs for LINC02682 Gene

Paralogs for LINC02682 Gene

No data available for Paralogs for LINC02682 Gene

Variants for LINC02682 Gene

VarElect - NGS phenotyper. Rapid prioritization of variants from NGS data powered by 100+ GeneCards sources

Sequence variations from dbSNP and Humsavar for LINC02682 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000043843 -- 15,925,923(+) G/A genic_downstream_transcript_variant, intron_variant
rs1000105510 -- 15,913,264(+) G/T genic_upstream_transcript_variant, intron_variant
rs1000449820 -- 15,924,676(+) G/A downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000635222 -- 15,925,993(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000921361 -- 15,923,909(+) C/G intron_variant, non_coding_transcript_variant

Additional Variant Information for LINC02682 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02682

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02682 Gene

Disorders for LINC02682 Gene

No disorders were found for LINC02682 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02682 Gene

Publications for LINC02682 Gene

  1. Lnc-SOX6-1 upregulation correlates with poor risk stratification and worse treatment outcomes, and promotes cell proliferation while inhibits apoptosis in pediatric acute myeloid leukemia. (PMID: 30624855) Guan X … Guo Y (International journal of laboratory hematology 2019) 2 3 58

No data available for External Links for LINC02682 Gene

Products for LINC02682 Gene

Sources for LINC02682 Gene

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