Aliases for LINC02682 Gene

Subcategory (RNA class) for LINC02682 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02682 Gene

  • Long Intergenic Non-Protein Coding RNA 2682 2 3 5
  • TCONS_00019584 2 3
  • Lnc-SOX6-1 2 3
  • LINC02682 2 5
  • NONHSAG007738.2 91
  • HSALNG0082882 164
  • Lnc-INSC-3 165

External Ids for LINC02682 Gene

Summaries for LINC02682 Gene

GeneCards Summary for LINC02682 Gene

LINC02682 (Long Intergenic Non-Protein Coding RNA 2682) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02682 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02682 Gene

Genomics for LINC02682 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02682 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J015911 Enhancer 0.6 Ensembl ENCODE 610.9 +1.6 1572 3.8 CEBPB ZBTB17 CTCF SPI1 RAD21 MEIS2 LINC02682 lnc-SOX6-1 HSALNG0082884 LOC102724957 C11orf58
GH11J015941 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 8.1 +30.6 30552 0.8 CTCF HNRNPL LARP7 ZNF143 REST RAD21 IKZF2 TRIM22 FUS YY1 LINC02682 HSALNG0082884 lnc-SOX6-1 LOC102724957 C11orf58
GH11J015937 Enhancer 0.6 Ensembl ENCODE 10.6 +27.6 27623 1.5 CTCF RAD21 SP1 LINC02682 C11orf58 SOX6 HSALNG0082884 lnc-SOX6-1 LOC102724957
GH11J015920 Enhancer 0.3 Ensembl 11 +10.7 10673 1.2 ZMYM3 EGR2 LINC02682 lnc-SOX6-1 HSALNG0082884 LOC102724957 C11orf58
GH11J015903 Enhancer 0.6 Ensembl 0.4 -7.1 -7127 0.4 HNRNPL CTBP1 NR3C1 ESRRA PKNOX1 ZFHX2 STAT3 FOSL2 HNF4A RXRA HSALNG0082881 LINC02682 LOC102724957 C11orf58
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02682 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02682 Gene

Genomic Locations for LINC02682 Gene
chr11:15,910,528-15,930,951
(GRCh38/hg38)
Size:
20,424 bases
Orientation:
Plus strand
chr11:15,932,503-15,948,989
(GRCh37/hg19)
Size:
16,487 bases
Orientation:
Plus strand

Genomic View for LINC02682 Gene

Genes around LINC02682 on UCSC Golden Path with GeneCards custom track
LINC02682 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02682 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02682 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02682 Gene

Proteins for LINC02682 Gene

Post-translational modifications for LINC02682 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02682 Gene

Domains & Families for LINC02682 Gene

Gene Families for LINC02682 Gene

genes like me logo Genes that share domains with LINC02682: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02682 Gene

Function for LINC02682 Gene

Phenotypes From GWAS Catalog for LINC02682 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02682 Gene

Localization for LINC02682 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02682 Gene

Pathways & Interactions for LINC02682 Gene

PathCards logo

SuperPathways for LINC02682 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02682 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02682 Gene

Drugs & Compounds for LINC02682 Gene

No Compound Related Data Available

Transcripts for LINC02682 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02682 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EEF26D_9606 lncRNA 1587 2

HGNC: 54177,

Ensembl: ENST00000668376 (view in UCSC) ,

URS0000EEFD9A_9606 lncRNA 1377 1

Ensembl: ENST00000667221 (view in UCSC) ,

URS0000EF5D10_9606 lncRNA 1372 1

Ensembl: ENST00000669725 (view in UCSC) ,

URS0000EF66E5_9606 lncRNA 1361 1

Ensembl: ENST00000670509 (view in UCSC) ,

URS0000EF4D74_9606 lncRNA 1317 1

Ensembl: ENST00000664817 (view in UCSC) ,

LINC02682 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02682 Gene

No ASD Table

Relevant External Links for LINC02682 Gene

GeneLoc Exon Structure for
LINC02682

No data available for mRNA/cDNA for LINC02682 Gene

Expression for LINC02682 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02682 Gene

Orthologs for LINC02682 Gene

Evolution for LINC02682 Gene

ENSEMBL:
Gene Tree for LINC02682 (if available)
TreeFam:
Gene Tree for LINC02682 (if available)

No data available for Orthologs for LINC02682 Gene

Paralogs for LINC02682 Gene

No data available for Paralogs for LINC02682 Gene

Variants for LINC02682 Gene

Additional dbSNP identifiers (rs#s) for LINC02682 Gene

Additional Variant Information for LINC02682 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02682

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02682 Gene

Disorders for LINC02682 Gene

No disorders were found for LINC02682 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02682 Gene

Publications for LINC02682 Gene

  1. Lnc-SOX6-1 upregulation correlates with poor risk stratification and worse treatment outcomes, and promotes cell proliferation while inhibits apoptosis in pediatric acute myeloid leukemia. (PMID: 30624855) Guan X … Guo Y (International journal of laboratory hematology 2019) 2 3

No data available for Mastermind for LINC02682 Gene

Products for LINC02682 Gene

Sources for LINC02682 Gene