Aliases for LINC02676 Gene

Data sources for LINC02676 Gene:

RNA type for LINC02676 Gene

lncRNA

Aliases for LINC02676 Gene

External Ids for LINC02676 Gene

Previous GeneCards Identifiers for LINC02676 Gene

  • GC10P008899

Summaries for LINC02676 Gene

GeneCards Summary for LINC02676 Gene

LINC02676 (Long Intergenic Non-Protein Coding RNA 2676) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02676 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02676 Gene

Genomics for LINC02676 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02676 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J008726 Enhancer 1 Ensembl ENCODE 250.7 0.0 -8 1.3 ZNF217 CEBPB MBD2 ELF1 CTBP1 RXRA CUX1 NONO STAT3 ZNF843 LINC02676 ENSG00000270234 GATA3
GH10J008731 Enhancer 0.3 Ensembl ENCODE 0.4 +5.2 5198 0.7 MK280144-034 LINC02676 GATA3
GH10J008758 Enhancer 0.5 ENCODE 0.3 +31.9 31878 0.1 SMARCE1 DPF2 ZNF24 FOS EP300 HSALNG0076077-001 piR-61101-037 LINC02676 GATA3
GH10J008800 Enhancer 0.5 Ensembl 0.2 +74.1 74146 0.2 CREB1 MNT FOS MAFK BACH1 HSALNG0076077-001 NONHSAG005191.2 LINC02676 GATA3
GH10J008767 Enhancer 0.3 Ensembl 0.3 +41.5 41545 0.2 RFX1 HSALNG0076077-001 LINC02676 NONHSAG005191.2 GATA3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02676 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02676 Gene

Latest Assembly
chr10:8,726,355-8,915,071
(GRCh38/hg38)
Size:
188,717 bases
Orientation:
Plus strand

Previous Assembly
chr10:8,939,952-8,956,559
(GRCh37/hg19 by Entrez Gene)
Size:
16,608 bases
Orientation:
Plus strand

chr10:8,939,952-8,956,559
(GRCh37/hg19 by Ensembl)
Size:
16,608 bases
Orientation:
Plus strand

Genomic View for LINC02676 Gene

Genes around LINC02676 on UCSC Golden Path with GeneCards custom track
LINC02676 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02676 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02676 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02676 Gene

Proteins for LINC02676 Gene

Post-translational modifications for LINC02676 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02676 Gene

Domains & Families for LINC02676 Gene

Gene Families for LINC02676 Gene

genes like me logo Genes that share domains with LINC02676: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02676 Gene

Function for LINC02676 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02676 Gene

Localization for LINC02676 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02676 Gene

Pathways & Interactions for LINC02676 Gene

PathCards logo

SuperPathways for LINC02676 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02676 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02676 Gene

Drugs & Compounds for LINC02676 Gene

No Compound Related Data Available

Transcripts for LINC02676 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02676 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000471A66_9606 lncRNA 366 4

Ensembl: ENST00000447297 (view in UCSC) ,

LncBook: HSALNT0158710,

LNCipedia: lnc-GATA3-6:1,

NONCODE: NONHSAT011333.2,

URS00008E39FA_9606 lncRNA 366 1

RefSeq: NR_131944,

URS00008B72B0_9606 lncRNA 370 2

LNCipedia: lnc-GATA3-6:2,

NONCODE: NONHSAT011332.2,

URS00009B7005_9606 lncRNA 366 2

LncBook: HSALNT0158711,

NONCODE: NONHSAT155089.1,

URS0001BF3DD4_9606 lncRNA 27927 1

LncBook: HSALNT0158696,

LINC02676 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02676 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02676 Gene

No ASD Table

Relevant External Links for LINC02676 Gene

GeneLoc Exon Structure for
LINC02676

Expression for LINC02676 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02676 Gene

Orthologs for LINC02676 Gene

Evolution for LINC02676 Gene

ENSEMBL:
Gene Tree for LINC02676 (if available)
TreeFam:
Gene Tree for LINC02676 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02676

No data available for Orthologs for LINC02676 Gene

Paralogs for LINC02676 Gene

No data available for Paralogs for LINC02676 Gene

Variants for LINC02676 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02676 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02676 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02676
Leiden Open Variation Database (LOVD)
LINC02676

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02676 Gene

Disorders for LINC02676 Gene

Additional Disease Information for LINC02676

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02676 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02676 Gene

Publications for LINC02676 Gene

No publications were found for LINC02676 Gene.

No data available for Mastermind for LINC02676 Gene

Products for LINC02676 Gene

Sources for LINC02676 Gene