Aliases for LINC02673 Gene

Subcategory (RNA class) for LINC02673 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LINC02673 Gene

  • Long Intergenic Non-Protein Coding RNA 2673 2 3 5
  • NONHSAG005464 94
  • Lnc-MASTL-2 170

External Ids for LINC02673 Gene

Summaries for LINC02673 Gene

GeneCards Summary for LINC02673 Gene

LINC02673 (Long Intergenic Non-Protein Coding RNA 2673) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LINC02673 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02673 Gene

Genomics for LINC02673 Gene

GeneHancer (GH) Regulatory Elements for LINC02673 Gene

Promoters and enhancers for LINC02673 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J027319 Promoter/Enhancer 1 FANTOM5 ENCODE CraniofacialAtlas 15.1 -23.5 -23516 1.7 POLR2A CTBP1 CEBPB STAT1 STAT3 FOS LINC02673 MASTL ABI1 ACBD5 RNU6-666P RNU6-452P ARMC4P1
GH10J027298 Enhancer 0.5 Ensembl 19.3 -45.0 -45035 1.6 ZNF24 CREB1 NFE2 MAFG FOXA1 FOS piR-36393-036 piR-43099-040 piR-43583-039 piR-41399-035 piR-56022-037 piR-45504-038 piR-50308-040 piR-53562-034 piR-48301-034 piR-57176-060
GH10J027344 Enhancer 0.7 Ensembl 5.8 +3.3 3265 4.2 LCORL MYC RELA HLF MAX NFIB ZNF687 IKZF1 ZNF512 IKZF2 lnc-ACBD5-3 ACBD5 MASTL YME1L1 LINC02673 APBB1IP LRRC37A6P
GH10J027340 Enhancer 0.6 Ensembl 5.1 -2.2 -2235 0.8 PRDM1 SOX13 TCF7 FOXA2 FOXP1 ZNF335 FOXA1 SMAD4 BCL6 RARA ENSG00000215409 LINC02673 ARMC4P1 lnc-ACBD5-3 RNU6-452P
GH10J027334 Enhancer 0.2 Ensembl 5.2 -8.1 -8135 1 RNU6-452P LINC02673 FAM238C ENSG00000215409 RNU6-666P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02673 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02673 Gene

Genomic Locations for LINC02673 Gene
chr10:27,343,436-27,344,917
(GRCh38/hg38)
Size:
1,482 bases
Orientation:
Plus strand
chr10:27,632,365-27,633,846
(GRCh37/hg19)
Size:
1,482 bases
Orientation:
Plus strand

Genomic View for LINC02673 Gene

Genes around LINC02673 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02673 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02673 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02673 Gene

Proteins for LINC02673 Gene

Post-translational modifications for LINC02673 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02673 Gene

Domains & Families for LINC02673 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02673 Gene

Function for LINC02673 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02673 Gene

Localization for LINC02673 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02673 Gene

Pathways & Interactions for LINC02673 Gene

PathCards logo

SuperPathways for LINC02673 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02673 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02673 Gene

Drugs & Compounds for LINC02673 Gene

No Compound Related Data Available

Transcripts for LINC02673 Gene

mRNA/cDNA for LINC02673 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) LNCipedia transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02673 Gene

No ASD Table

Relevant External Links for LINC02673 Gene

GeneLoc Exon Structure for
LINC02673
ECgene alternative splicing isoforms for
LINC02673

Expression for LINC02673 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02673 Gene

Orthologs for LINC02673 Gene

Evolution for LINC02673 Gene

ENSEMBL:
Gene Tree for LINC02673 (if available)
TreeFam:
Gene Tree for LINC02673 (if available)

No data available for Orthologs for LINC02673 Gene

Paralogs for LINC02673 Gene

No data available for Paralogs for LINC02673 Gene

Variants for LINC02673 Gene

Sequence variations from dbSNP and Humsavar for LINC02673 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1002444176 -- 27,344,844(+) A/T non_coding_transcript_variant
rs1003151084 -- 27,342,977(+) A/C non_coding_transcript_variant
rs1003457243 -- 27,343,246(+) T/A/C non_coding_transcript_variant
rs1004300313 -- 27,343,616(+) C/A/T non_coding_transcript_variant
rs1006680892 -- 27,342,002(+) C/T upstream_transcript_variant

Additional Variant Information for LINC02673 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02673

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02673 Gene

Disorders for LINC02673 Gene

No disorders were found for LINC02673 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02673 Gene

Publications for LINC02673 Gene

No publications were found for LINC02673 Gene.

No data available for External Links for LINC02673 Gene

Products for LINC02673 Gene

Sources for LINC02673 Gene