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LINC02672 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 2672

GCID:
GC10M052974
GIFtS:
8
Genes Participants
UDN Logo

Aliases for LINC02672 Gene

Subcategory (RNA class) for LINC02672 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02672 Gene

  • Long Intergenic Non-Protein Coding RNA 2672 2 3 5

External Ids for LINC02672 Gene

Summaries for LINC02672 Gene

GeneCards Summary for LINC02672 Gene

LINC02672 (Long Intergenic Non-Protein Coding RNA 2672) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02672 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02672 Gene

Genomics for LINC02672 Gene

GeneHancer (GH) Regulatory Elements for LINC02672 Gene

Promoters and enhancers for LINC02672 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J053029 Enhancer 0.7 Ensembl ENCODE 672.2 -0.2 -202 2.2 IKZF1 PKNOX1 IKZF2 CTBP1 RUNX3 DPF2 SMARCE1 LINC02672 SNRPEP8
GH10J053022 Enhancer 0.7 Ensembl ENCODE 69.3 +7.4 7398 1.8 SP1 USF1 NANOG POU5F1 LINC02672 LOC105378308
GH10J053012 Enhancer 0.9 FANTOM5 Ensembl 46.6 +16.8 16798 3.4 IKZF1 ZBTB33 IKZF2 TRIM22 PKNOX1 DPF2 BMI1 NBN JUNB ATF2 LINC02672 MBL2 LOC105378308
GH10J052964 Enhancer 1 ENCODE dbSUPER 40.8 +62.9 62926 5.8 SP1 RELA CREM IKZF1 ZBTB33 BACH1 IKZF2 CEBPA LARP7 TRIM22 LOC105378308 LINC02672 GC10M052950
GH10J053005 Enhancer 1.1 Ensembl ENCODE 24 +23.9 23898 2.8 MAFK TFE3 SP1 HNF1A PPARG KAT8 RXRA SOX13 CEBPA GATAD2A LINC02672 LOC105378308
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02672 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02672 Gene

Genomic Locations for LINC02672 Gene
chr10:52,972,263-53,030,299
(GRCh38/hg38)
Size:
58,037 bases
Orientation:
Minus strand
chr10:54,733,248-54,735,575
(GRCh37/hg19)
Size:
2,328 bases
Orientation:
Minus strand

Genomic View for LINC02672 Gene

Genes around LINC02672 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02672 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02672 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02672 Gene

Proteins for LINC02672 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02672 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02672 Gene

Domains & Families for LINC02672 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02672 Gene

Function for LINC02672 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02672 Gene

Localization for LINC02672 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02672 Gene

Pathways & Interactions for LINC02672 Gene

GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
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SuperPathways for LINC02672 Gene

No Data Available

Interacting Proteins for LINC02672 Gene

Gene Ontology (GO) - Biological Process for LINC02672 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02672 Gene

Drugs & Compounds for LINC02672 Gene

Products:

  1. Drug
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Compound Related Data Available

Transcripts for LINC02672 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC02672 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02672 Gene

No ASD Table

Relevant External Links for LINC02672 Gene

GeneLoc Exon Structure for
LINC02672
ECgene alternative splicing isoforms for
LINC02672

Expression for LINC02672 Gene

Products:

  1. Primer
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02672 Gene

Orthologs for LINC02672 Gene

Evolution for LINC02672 Gene

ENSEMBL:
Gene Tree for LINC02672 (if available)
TreeFam:
Gene Tree for LINC02672 (if available)

No data available for Orthologs for LINC02672 Gene

Paralogs for LINC02672 Gene

No data available for Paralogs for LINC02672 Gene

Variants for LINC02672 Gene

VarElect - NGS phenotyper. Rapid prioritization of variants from NGS data powered by 100+ GeneCards sources

Sequence variations from dbSNP and Humsavar for LINC02672 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000157878 -- 52,973,223(-) T/G non_coding_transcript_variant
rs1001556231 -- 52,971,810(-) C/A downstream_transcript_variant
rs1001597062 -- 52,975,511(-) C/A upstream_transcript_variant
rs1001894808 -- 52,976,452(-) C/T upstream_transcript_variant
rs1001925777 -- 52,976,688(-) G/C upstream_transcript_variant

Additional Variant Information for LINC02672 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02672

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02672 Gene

Disorders for LINC02672 Gene

No disorders were found for LINC02672 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02672 Gene

Publications for LINC02672 Gene

No publications were found for LINC02672 Gene.

ExternalLinks

View latest publications for LINC02672 gene in Mastermind

Products for LINC02672 Gene

Sources for LINC02672 Gene

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