Aliases for LINC02665 Gene

Data sources for LINC02665 Gene:

RNA type for LINC02665 Gene

lncRNA

Aliases for LINC02665 Gene

External Ids for LINC02665 Gene

Summaries for LINC02665 Gene

GeneCards Summary for LINC02665 Gene

LINC02665 (Long Intergenic Non-Protein Coding RNA 2665) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02665 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02665 Gene

Genomics for LINC02665 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02665 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J007085 Enhancer 0.8 ENCODE CraniofacialAtlas 0.4 -10.5 -10482 1.8 IKZF1 YY1 ZBTB33 NR2F6 NR2C1 ZBTB12 RAD21 ZNF660 POLR2A ZKSCAN1 LINC02665 lnc-ITIH2-6 LOC105376387 ENSG00000287277 LOC107984203 SFMBT2
GH10J007093 Enhancer 0.4 Ensembl 0.7 -2.4 -2415 0.4 MAFF ZNF316 MAFK EMSY LINC02665 ENSG00000287277 lnc-ITIH2-6 LOC105376387 LOC107984203 SFMBT2
GH10J007090 Enhancer 0.5 Ensembl 0.4 -5.6 -5615 0.8 FEZF1 ZNF843 PRDM6 PKNOX1 CTBP1 OSR2 LINC02665 lnc-ITIH2-6 ENSG00000287277 LOC105376387 LOC107984203 SFMBT2
GH10J007074 Enhancer 0.3 Ensembl 0.4 -21.4 -21415 0.8 MNT lnc-ITIH2-6 LINC02665 ENSG00000287277 LOC105376387 LOC107984203 SFMBT2
GH10J007088 Enhancer 0.2 Ensembl 0.4 -6.9 -6915 1.4 LINC02665 lnc-ITIH2-6 ENSG00000287277 LOC105376387 LOC107984203 SFMBT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02665 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02665 Gene

Latest Assembly
chr10:7,096,216-7,097,676
(GRCh38/hg38)
Size:
1,461 bases
Orientation:
Plus strand

Previous Assembly
chr10:7,139,114-7,139,637
(GRCh37/hg19 by Ensembl)
Size:
524 bases
Orientation:
Plus strand

Genomic View for LINC02665 Gene

Genes around LINC02665 on UCSC Golden Path with GeneCards custom track
LINC02665 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02665 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02665 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02665 Gene

Proteins for LINC02665 Gene

Post-translational modifications for LINC02665 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02665 Gene

Domains & Families for LINC02665 Gene

Gene Families for LINC02665 Gene

genes like me logo Genes that share domains with LINC02665: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02665 Gene

Function for LINC02665 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02665 Gene

Localization for LINC02665 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02665 Gene

Pathways & Interactions for LINC02665 Gene

PathCards logo

SuperPathways for LINC02665 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02665 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02665 Gene

Drugs & Compounds for LINC02665 Gene

No Compound Related Data Available

Transcripts for LINC02665 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02665 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF338E_9606 lncRNA 729 1

Ensembl: ENST00000420049 (view in UCSC) ,

URS00002B252B_9606 lncRNA 438 3

LncBook: HSALNT0158540,

LNCipedia: lnc-ITIH2-5:1,

NONCODE: NONHSAT011274.2,

URS00009B347B_9606 lncRNA 436 2

LncBook: HSALNT0158541,

NONCODE: NONHSAT155065.1,

URS0001BD7503_9606 lncRNA 436 1

LncBook: HSALNT0158540,

URS0001BD9B71_9606 lncRNA 436 1

LncBook: HSALNT0158541,

LINC02665 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02665 Gene

No ASD Table

Relevant External Links for LINC02665 Gene

GeneLoc Exon Structure for
LINC02665

No data available for mRNA/cDNA for LINC02665 Gene

Expression for LINC02665 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02665 Gene

Orthologs for LINC02665 Gene

Evolution for LINC02665 Gene

ENSEMBL:
Gene Tree for LINC02665 (if available)
TreeFam:
Gene Tree for LINC02665 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02665

No data available for Orthologs for LINC02665 Gene

Paralogs for LINC02665 Gene

No data available for Paralogs for LINC02665 Gene

Variants for LINC02665 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02665 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02665 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02665
Leiden Open Variation Database (LOVD)
LINC02665

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02665 Gene

Disorders for LINC02665 Gene

No disorders were found for LINC02665 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02665 Gene

Publications for LINC02665 Gene

No publications were found for LINC02665 Gene.

Products for LINC02665 Gene

Sources for LINC02665 Gene