Aliases for LINC02663 Gene

Data sources for LINC02663 Gene:

RNA type for LINC02663 Gene

lncRNA

Aliases for LINC02663 Gene

External Ids for LINC02663 Gene

Summaries for LINC02663 Gene

GeneCards Summary for LINC02663 Gene

LINC02663 (Long Intergenic Non-Protein Coding RNA 2663) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02663 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02663 Gene

Genomics for LINC02663 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02663 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J009878 Promoter 0.7 EPDnew 250.7 +0.3 280 0.1 TBP PRDM10 ZNF384 NRF1 POLR2A TEAD4 GABPB1 LINC02663 piR-53431-038 lnc-USP6NL-18 HSALNG0076109 CELF2
GH10J009759 Promoter 0.3 EPDnew 250.1 +119.1 119142 0.1 LINC02663 HSALNG0076109 NONHSAG005203.2 CELF2
GH10J009823 Enhancer 1.1 Ensembl ENCODE 0.2 +53.6 53616 2.8 MYC NCOR1 IKZF1 ZNF592 NFIC HES1 BHLHE40 MNT NR2C1 ARNT piR-39858-043 HSALNG0076110 lnc-USP6NL-19 LINC02663 HSALNG0076109 lnc-USP6NL-18 CELF2
GH10J009910 Enhancer 0.4 Ensembl ENCODE 0.3 -33.1 -33059 1.3 POU5F1 lnc-USP6NL-18 LINC02663 HSALNG0076109 CELF2
GH10J009813 Enhancer 0.4 ENCODE 0.2 +63.9 63908 1.1 ATF4 CEBPB ATF3 CEBPG HSALNG0076110 lnc-USP6NL-19 piR-39858-043 HSALNG0076109 LINC02663 CELF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02663 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02663 Gene

Latest Assembly
chr10:9,443,281-9,878,395
(GRCh38/hg38)
Size:
435,115 bases
Orientation:
Minus strand

Previous Assembly
chr10:9,800,746-9,801,200
(GRCh37/hg19 by Ensembl)
Size:
455 bases
Orientation:
Minus strand

Genomic View for LINC02663 Gene

Genes around LINC02663 on UCSC Golden Path with GeneCards custom track
LINC02663 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02663 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02663 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02663 Gene

Proteins for LINC02663 Gene

Post-translational modifications for LINC02663 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02663 Gene

Domains & Families for LINC02663 Gene

Gene Families for LINC02663 Gene

genes like me logo Genes that share domains with LINC02663: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02663 Gene

Function for LINC02663 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02663 Gene

Localization for LINC02663 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02663 Gene

Pathways & Interactions for LINC02663 Gene

PathCards logo

SuperPathways for LINC02663 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02663 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02663 Gene

Drugs & Compounds for LINC02663 Gene

No Compound Related Data Available

Transcripts for LINC02663 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02663 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00003D2985_9606 lncRNA 346 2

Ensembl: ENST00000419836 (view in UCSC) ,

LNCipedia: lnc-USP6NL-11:2,

URS0000DB9573_9606 lncRNA 613 1

Ensembl: ENST00000647601 (view in UCSC) ,

URS0000EF4B8A_9606 lncRNA 388 1

Ensembl: ENST00000659451 (view in UCSC) ,

URS00008BF654_9606 lncRNA 443 3

LncBook: HSALNT0158809,

LNCipedia: lnc-USP6NL-10:1,

NONCODE: NONHSAT011347.2,

URS00008BCA9C_9606 lncRNA 381 3

LncBook: HSALNT0158813,

LNCipedia: lnc-USP6NL-10:2,

NONCODE: NONHSAT011350.2,

LINC02663 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02663 Gene

No ASD Table

Relevant External Links for LINC02663 Gene

GeneLoc Exon Structure for
LINC02663

No data available for mRNA/cDNA for LINC02663 Gene

Expression for LINC02663 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02663 Gene

Orthologs for LINC02663 Gene

Evolution for LINC02663 Gene

ENSEMBL:
Gene Tree for LINC02663 (if available)
TreeFam:
Gene Tree for LINC02663 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02663

No data available for Orthologs for LINC02663 Gene

Paralogs for LINC02663 Gene

No data available for Paralogs for LINC02663 Gene

Variants for LINC02663 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02663 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02663 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02663
Leiden Open Variation Database (LOVD)
LINC02663

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02663 Gene

Disorders for LINC02663 Gene

No disorders were found for LINC02663 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02663 Gene

Publications for LINC02663 Gene

No publications were found for LINC02663 Gene.

No data available for Mastermind for LINC02663 Gene

Products for LINC02663 Gene

Sources for LINC02663 Gene