LINC02659 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2659

GC10M043903
GIFtS:
6

Aliases for LINC02659 Gene

Subcategory (RNA class) for LINC02659 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02659 Gene

  • Long Intergenic Non-Protein Coding RNA 2659 2 3 5
  • NONHSAG005735 92
  • HSALNG0077595 167
  • Lnc-ZNF32-3 168
  • LINC02659 2

External Ids for LINC02659 Gene

Summaries for LINC02659 Gene

GeneCards Summary for LINC02659 Gene

LINC02659 (Long Intergenic Non-Protein Coding RNA 2659) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02659 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02659 Gene

Genomics for LINC02659 Gene

GeneHancer (GH) Regulatory Elements for LINC02659 Gene

Promoters and enhancers for LINC02659 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J043909 Enhancer 0.7 Ensembl ENCODE 508.6 +1.8 1807 2.1 NR2F2 NFE2 NFE2L1 MAFG RAD21 RXRA SP1 PRDM1 EMSY LINC02659 ENSG00000227029 LINC00841 CXCL12 lnc-ZNF32-8
GH10J043913 Enhancer 0.3 Ensembl 500.7 -1.5 -1523 0.4 GATA3 ENSG00000227029 LINC02659 lnc-ZNF32-4 piR-44398-001 piR-36756-009 LINC00841 lnc-ZNF32-8
GH10J043861 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +48.9 48877 4.4 NCOR1 FOS ZIC2 KDM6A TCF7 SMARCC2 TEAD1 ZBTB26 ZKSCAN8 FOXA2 LINC02659 piR-33056-002 LINC00841 LINC00619 LINC00840
GH10J043867 Enhancer 1.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.4 +43.7 43677 3.2 JUND FOS MYNN WT1 USF1 FOSL2 SMAD4 RARA JUN BHLHE40 LINC02659 piR-33056-002 LINC00841 LINC00619 LINC00840
GH10J043855 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 11.5 +54.5 54477 4 JUND FOS ZIC2 ZNF341 ZNF316 MAFF GATA3 MAFK EZH2 RCOR1 LINC02659 piR-33056-002 LINC00841 LINC00619 LINC00840
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02659 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02659 Gene

Genomic Locations for LINC02659 Gene
chr10:43,900,874-43,912,478
(GRCh38/hg38)
Size:
11,605 bases
Orientation:
Minus strand
chr10:44,396,813-44,407,774
(GRCh37/hg19)
Size:
10,962 bases
Orientation:
Minus strand

Genomic View for LINC02659 Gene

Genes around LINC02659 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02659 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02659 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02659 Gene

Proteins for LINC02659 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02659 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02659 Gene

Domains & Families for LINC02659 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02659 Gene

Function for LINC02659 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02659 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02659 Gene

Localization for LINC02659 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02659 Gene

Pathways & Interactions for LINC02659 Gene

PathCards logo

SuperPathways for LINC02659 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02659 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02659 Gene

Drugs & Compounds for LINC02659 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02659 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC02659 Gene

10 RNACentral transcripts :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
1 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02659 Gene

No ASD Table

Relevant External Links for LINC02659 Gene

GeneLoc Exon Structure for
LINC02659

Expression for LINC02659 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02659 Gene

Orthologs for LINC02659 Gene

Evolution for LINC02659 Gene

ENSEMBL:
Gene Tree for LINC02659 (if available)
TreeFam:
Gene Tree for LINC02659 (if available)

No data available for Orthologs for LINC02659 Gene

Paralogs for LINC02659 Gene

No data available for Paralogs for LINC02659 Gene

Variants for LINC02659 Gene

Additional dbSNP identifiers (rs#s) for LINC02659 Gene

Additional Variant Information for LINC02659 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02659

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02659 Gene

Disorders for LINC02659 Gene

No disorders were found for LINC02659 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02659 Gene

Publications for LINC02659 Gene

No publications were found for LINC02659 Gene.

No data available for Mastermind for LINC02659 Gene

Products for LINC02659 Gene

Sources for LINC02659 Gene