Aliases for LINC02656 Gene

Data sources for LINC02656 Gene:

RNA type for LINC02656 Gene

lncRNA

Aliases for LINC02656 Gene

External Ids for LINC02656 Gene

Summaries for LINC02656 Gene

GeneCards Summary for LINC02656 Gene

LINC02656 (Long Intergenic Non-Protein Coding RNA 2656) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02656 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02656 Gene

Genomics for LINC02656 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02656 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J006350 Promoter 0.3 EPDnew 250.7 +0.0 5 0.1 HSALNG0075945 LINC02656 piR-48209-053 LINC02649 PFKFB3 PRKCQ
GH10J006238 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 4.7 -111.1 -111102 2 ZNF600 JUND ZNF580 BHLHE40 ZEB1 ZBTB7B ZNF217 EP300 CTBP1 MAFF PFKFB3 LINC02656 IL15RA RF00017-507 piR-44205 HSALNG0075932 PRKCQ
GH10J006327 Enhancer 0.7 Ensembl ENCODE 7.1 -21.3 -21314 3.2 L3MBTL2 CEBPB IKZF1 SPI1 IKZF2 EED ATF2 ZBTB40 EGR1 DPPA5P3 HSALNG0075943 LINC02656 LINC02649 PFKFB3 PRKCQ
GH10J006231 Enhancer 0.4 dbSUPER 9.1 -117.4 -117374 3.5 POLR2A RBM22 HNRNPL HIC1 piR-44205 LINC02649 LINC02656 HSALNG0075932 NONHSAG005139.2 PFKFB3 PRKCQ
GH10J006221 Enhancer 0.8 Ensembl ENCODE dbSUPER 4.9 -127.9 -127873 2.7 POLR2A HDGF BHLHE40 TARDBP 5MWI_A-015 NONHSAG005139.2 piR-57202 LINC02656 MN309148 PFKFB3 PRKCQ
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02656 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02656 Gene

Latest Assembly
chr10:6,350,315-6,353,808
(GRCh38/hg38)
Size:
3,494 bases
Orientation:
Plus strand

Previous Assembly
chr10:6,392,278-6,395,770
(GRCh37/hg19 by Entrez Gene)
Size:
3,493 bases
Orientation:
Plus strand

chr10:6,392,278-6,394,723
(GRCh37/hg19 by Ensembl)
Size:
2,446 bases
Orientation:
Plus strand

Genomic View for LINC02656 Gene

Genes around LINC02656 on UCSC Golden Path with GeneCards custom track
LINC02656 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02656 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02656 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02656 Gene

Proteins for LINC02656 Gene

Post-translational modifications for LINC02656 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02656 Gene

Domains & Families for LINC02656 Gene

Gene Families for LINC02656 Gene

genes like me logo Genes that share domains with LINC02656: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02656 Gene

Function for LINC02656 Gene

Phenotypes From GWAS Catalog for LINC02656 Gene

Phenotypes for LINC02656 Gene

genes like me logo Genes that share phenotypes with LINC02656: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02656 Gene

Localization for LINC02656 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02656 Gene

Pathways & Interactions for LINC02656 Gene

PathCards logo

SuperPathways for LINC02656 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02656 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02656 Gene

Drugs & Compounds for LINC02656 Gene

No Compound Related Data Available

Transcripts for LINC02656 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02656 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000762F40_9606 lncRNA 2447 2

Ensembl: ENST00000391437 (view in UCSC) ,

LNCipedia: lnc-PFKFB3-11:1,

URS0000BC440D_9606 lncRNA 3493 1

RefSeq: NR_148966,

LINC02656 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02656 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02656 Gene

No ASD Table

Relevant External Links for LINC02656 Gene

GeneLoc Exon Structure for
LINC02656

Expression for LINC02656 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02656

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02656 Gene

Orthologs for LINC02656 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC02656 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 30
  • 97 (a)
OneToOne
Species where no ortholog for LINC02656 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC02656 Gene

ENSEMBL:
Gene Tree for LINC02656 (if available)
TreeFam:
Gene Tree for LINC02656 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02656

Paralogs for LINC02656 Gene

No data available for Paralogs for LINC02656 Gene

Variants for LINC02656 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02656 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02656 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02656
Leiden Open Variation Database (LOVD)
LINC02656

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02656 Gene

Disorders for LINC02656 Gene

Additional Disease Information for LINC02656

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02656 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02656 Gene

Publications for LINC02656 Gene

  1. Genetics of rheumatoid arthritis contributes to biology and drug discovery. (PMID: 24390342) Okada Y … Plenge RM (Nature 2014) 3
  2. Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci. (PMID: 20453842) Stahl EA … Plenge RM (Nature genetics 2010) 3
  3. Common variants at CD40 and other loci confer risk of rheumatoid arthritis. (PMID: 18794853) Raychaudhuri S … Plenge RM (Nature genetics 2008) 3
  4. Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci. (PMID: 18978792) Cooper JD … Todd JA (Nature genetics 2008) 3

No data available for Mastermind for LINC02656 Gene

Products for LINC02656 Gene

Sources for LINC02656 Gene