Aliases for LINC02653 Gene

Subcategory (RNA class) for LINC02653 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02653 Gene

  • Long Intergenic Non-Protein Coding RNA 2653 2 3 5
  • HSALNG0079614 169
  • NONHSAG006503 94
  • Lnc-HTR7-1 170

External Ids for LINC02653 Gene

Previous GeneCards Identifiers for LINC02653 Gene

  • GC10M090403

Summaries for LINC02653 Gene

GeneCards Summary for LINC02653 Gene

LINC02653 (Long Intergenic Non-Protein Coding RNA 2653) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02653 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02653 Gene

Genomics for LINC02653 Gene

GeneHancer (GH) Regulatory Elements for LINC02653 Gene

Promoters and enhancers for LINC02653 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J090499 Enhancer 0.5 ENCODE 5 +167.1 167099 0.2 RFX1 CTBP1 BMI1 DPF2 ZNF217 SMARCE1 LINC02653 lnc-HTR7-2 ENSG00000238291 ENSG00000224750 lnc-RPP30-10
GH10J090644 Enhancer 0.3 Ensembl ENCODE 5.4 +21.8 21771 1 LINC02653 piR-50968-022
GH10J090645 Enhancer 0.2 Ensembl 4.9 +22.7 22747 0.2 LINC02653 piR-50968-022
GH10J090602 Enhancer 0.2 ENCODE 4.7 +63.1 63131 1.4 HTR7 LINC02653 piR-55110-016 piR-53733-004
GH10J090461 Enhancer 0.2 Ensembl 4.6 +204.7 204747 1 ENSG00000238291 LINC02653 ENSG00000224750 lnc-RPP30-10 lnc-HTR7-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02653 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02653 Gene

Genomic Locations for LINC02653 Gene
chr10:90,177,231-90,666,448
(GRCh38/hg38)
Size:
489,218 bases
Orientation:
Minus strand
chr10:92,162,278-92,300,562
(GRCh37/hg19)
Size:
138,285 bases
Orientation:
Minus strand

Genomic View for LINC02653 Gene

Genes around LINC02653 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02653 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02653 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02653 Gene

Proteins for LINC02653 Gene

Post-translational modifications for LINC02653 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02653 Gene

Domains & Families for LINC02653 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02653 Gene

Function for LINC02653 Gene

Phenotypes From GWAS Catalog for LINC02653 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02653 Gene

Localization for LINC02653 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02653 Gene

Pathways & Interactions for LINC02653 Gene

PathCards logo

SuperPathways for LINC02653 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02653 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02653 Gene

Drugs & Compounds for LINC02653 Gene

No Compound Related Data Available

Transcripts for LINC02653 Gene

mRNA/cDNA for LINC02653 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(5) LncBook transcripts :
(4) LNCipedia transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02653 Gene

No ASD Table

Relevant External Links for LINC02653 Gene

GeneLoc Exon Structure for
LINC02653
ECgene alternative splicing isoforms for
LINC02653

Expression for LINC02653 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02653 Gene

Orthologs for LINC02653 Gene

Evolution for LINC02653 Gene

ENSEMBL:
Gene Tree for LINC02653 (if available)
TreeFam:
Gene Tree for LINC02653 (if available)

No data available for Orthologs for LINC02653 Gene

Paralogs for LINC02653 Gene

No data available for Paralogs for LINC02653 Gene

Variants for LINC02653 Gene

Sequence variations from dbSNP and Humsavar for LINC02653 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000012434 -- 90,409,657(-) C/G intron_variant
rs1000031788 -- 90,541,156(-) C/G/T upstream_transcript_variant
rs1000058301 -- 90,536,589(-) C/T intron_variant
rs1000086654 -- 90,541,566(-) T/C upstream_transcript_variant
rs1000117137 -- 90,444,547(-) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02653 Gene

Variant ID Type Subtype PubMed ID
dgv1338n54 CNV gain 21841781
dgv952n100 CNV gain 25217958
esv2422237 CNV duplication 17116639
esv2630950 CNV deletion 19546169
esv2662280 CNV deletion 23128226
esv2739439 CNV deletion 23290073
esv3624183 CNV loss 21293372
nsv467430 CNV gain 19166990
nsv467432 CNV gain 19166990
nsv516743 CNV gain 19592680
nsv551875 CNV gain 21841781
nsv551883 CNV loss 21841781

Additional Variant Information for LINC02653 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02653

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02653 Gene

Disorders for LINC02653 Gene

No disorders were found for LINC02653 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02653 Gene

Publications for LINC02653 Gene

No publications were found for LINC02653 Gene.

No data available for External Links for LINC02653 Gene

Products for LINC02653 Gene

Sources for LINC02653 Gene