Aliases for LINC02652 Gene

Subcategory (RNA class) for LINC02652 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for LINC02652 Gene

  • Long Intergenic Non-Protein Coding RNA 2652 2 3 5
  • NONHSAG005479 94
  • Lnc-MPP7-2 170

External Ids for LINC02652 Gene

Summaries for LINC02652 Gene

GeneCards Summary for LINC02652 Gene

LINC02652 (Long Intergenic Non-Protein Coding RNA 2652) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02652 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02652 Gene

Genomics for LINC02652 Gene

GeneHancer (GH) Regulatory Elements for LINC02652 Gene

Promoters and enhancers for LINC02652 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J028494 Enhancer 0.8 ENCODE 750.6 +1.3 1286 0.2 SMARCE1 RUNX1 CC2D1A TEAD4 CBFA2T2 SMARCA4 TRIM24 MTA1 EGR1 IKZF1 LINC02652 piR-56133-024
GH10J028496 Enhancer 0.8 ENCODE 750.6 -0.7 -735 1 GATA3 SMARCE1 TCF7L2 ZNF217 MNT TEAD4 NFIB NCOA3 CBFA2T2 CEBPG LINC02652 WAC-AS1 WAC lnc-WAC-1
GH10J028838 Enhancer 1.1 Ensembl ENCODE 14.6 -343.4 -343420 2.9 ZBTB40 ZBTB6 SMARCE1 NR2F6 CC2D1A DACH1 ZNF121 TEAD4 ZKSCAN8 RERE ENSG00000271220 LINC01517 LINC02652 RN7SKP39 RPSAP10 ZNF101P1 LINC00837 RNU6-270P RPL21P93 lnc-MPP7-8
GH10J028499 Enhancer 0.7 Ensembl ENCODE 0.6 -4.4 -4428 1.5 CTBP1 DPF2 ZNF217 BCOR CUX1 GATA3 SMARCE1 WAC-AS1 WAC LINC02652 lnc-WAC-1
GH10J028491 Promoter/Enhancer 0.6 Ensembl ENCODE 0.6 +3.4 3360 1.7 ZBTB33 WAC-AS1 WAC LINC02652 piR-56133-024
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02652 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02652 Gene

Genomic Locations for LINC02652 Gene
chr10:28,433,008-28,495,813
(GRCh38/hg38)
Size:
62,806 bases
Orientation:
Minus strand
chr10:28,721,937-28,784,742
(GRCh37/hg19)
Size:
62,806 bases
Orientation:
Minus strand

Genomic View for LINC02652 Gene

Genes around LINC02652 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02652 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02652 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02652 Gene

Proteins for LINC02652 Gene

Post-translational modifications for LINC02652 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02652 Gene

Domains & Families for LINC02652 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02652 Gene

Function for LINC02652 Gene

Phenotypes From GWAS Catalog for LINC02652 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02652 Gene

Localization for LINC02652 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02652 Gene

Pathways & Interactions for LINC02652 Gene

PathCards logo

SuperPathways for LINC02652 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02652 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02652 Gene

Drugs & Compounds for LINC02652 Gene

No Compound Related Data Available

Transcripts for LINC02652 Gene

mRNA/cDNA for LINC02652 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02652 Gene

No ASD Table

Relevant External Links for LINC02652 Gene

GeneLoc Exon Structure for
LINC02652
ECgene alternative splicing isoforms for
LINC02652

Expression for LINC02652 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02652 Gene

Orthologs for LINC02652 Gene

Evolution for LINC02652 Gene

ENSEMBL:
Gene Tree for LINC02652 (if available)
TreeFam:
Gene Tree for LINC02652 (if available)

No data available for Orthologs for LINC02652 Gene

Paralogs for LINC02652 Gene

No data available for Paralogs for LINC02652 Gene

Variants for LINC02652 Gene

Sequence variations from dbSNP and Humsavar for LINC02652 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000073270 -- 28,489,753(-) C/T intron_variant
rs1000100524 -- 28,475,461(-) G/A intron_variant
rs1000116210 -- 28,439,899(-) T/C intron_variant
rs1000126915 -- 28,477,658(-) C/T intron_variant
rs1000166996 -- 28,494,179(-) G/C intron_variant

Additional Variant Information for LINC02652 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02652

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02652 Gene

Disorders for LINC02652 Gene

No disorders were found for LINC02652 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02652 Gene

Publications for LINC02652 Gene

No publications were found for LINC02652 Gene.

No data available for External Links for LINC02652 Gene

Products for LINC02652 Gene

Sources for LINC02652 Gene