Aliases for LINC02649 Gene

Data sources for LINC02649 Gene:

RNA type for LINC02649 Gene

lncRNA

Aliases for LINC02649 Gene

External Ids for LINC02649 Gene

Summaries for LINC02649 Gene

GeneCards Summary for LINC02649 Gene

LINC02649 (Long Intergenic Non-Protein Coding RNA 2649) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02649 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02649 Gene

Genomics for LINC02649 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02649 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02649 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02649 Gene

Latest Assembly
chr10:6,271,169-6,447,106
(GRCh38/hg38)
Size:
175,938 bases
Orientation:
Plus strand

Previous Assembly
chr10:6,368,507-6,377,944
(GRCh37/hg19 by Entrez Gene)
Size:
9,438 bases
Orientation:
Plus strand

chr10:6,319,650-6,377,944
(GRCh37/hg19 by Ensembl)
Size:
58,295 bases
Orientation:
Plus strand

Genomic View for LINC02649 Gene

Genes around LINC02649 on UCSC Golden Path with GeneCards custom track
LINC02649 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02649 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02649 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02649 Gene

Proteins for LINC02649 Gene

Post-translational modifications for LINC02649 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02649 Gene

Domains & Families for LINC02649 Gene

Gene Families for LINC02649 Gene

genes like me logo Genes that share domains with LINC02649: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02649 Gene

Function for LINC02649 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02649 Gene

Localization for LINC02649 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02649 Gene

Pathways & Interactions for LINC02649 Gene

PathCards logo

SuperPathways for LINC02649 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02649 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02649 Gene

Drugs & Compounds for LINC02649 Gene

No Compound Related Data Available

Transcripts for LINC02649 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02649 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000058AF67_9606 lncRNA 3093 3

Ensembl: ENST00000399868 (view in UCSC) ,

LNCipedia: lnc-PFKFB3-453:1,

NONCODE: NONHSAT155023.1,

URS000075AE77_9606 lncRNA 2967 2

RefSeq: NR_040079,

LNCipedia: lnc-PFKFB3-453:3,

URS0000EEEC50_9606 lncRNA 2170 1

Ensembl: ENST00000670683 (view in UCSC) ,

URS0000EF182A_9606 lncRNA 1743 1

Ensembl: ENST00000670319 (view in UCSC) ,

URS0000EEB270_9606 lncRNA 1543 1

Ensembl: ENST00000659311 (view in UCSC) ,

LINC02649 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02649 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02649 Gene

No ASD Table

Relevant External Links for LINC02649 Gene

GeneLoc Exon Structure for
LINC02649

Expression for LINC02649 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02649

SOURCE GeneReport for Unigene cluster for LINC02649 Gene:

Hs.58963
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02649 Gene

Orthologs for LINC02649 Gene

Evolution for LINC02649 Gene

ENSEMBL:
Gene Tree for LINC02649 (if available)
TreeFam:
Gene Tree for LINC02649 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02649

No data available for Orthologs for LINC02649 Gene

Paralogs for LINC02649 Gene

No data available for Paralogs for LINC02649 Gene

Variants for LINC02649 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02649 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02649 Gene

Variant ID Type Subtype PubMed ID
nsv7198 OTHER inversion 18451855

Additional Variant Information for LINC02649 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02649
Leiden Open Variation Database (LOVD)
LINC02649

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02649 Gene

Disorders for LINC02649 Gene

Additional Disease Information for LINC02649

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02649 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02649 Gene

Publications for LINC02649 Gene

  1. Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci. (PMID: 18978792) Cooper JD … Todd JA (Nature genetics 2008) 3

No data available for Mastermind for LINC02649 Gene

Products for LINC02649 Gene

Sources for LINC02649 Gene