Aliases for LINC02648 Gene

Data sources for LINC02648 Gene:

RNA type for LINC02648 Gene

lncRNA

Aliases for LINC02648 Gene

External Ids for LINC02648 Gene

Summaries for LINC02648 Gene

GeneCards Summary for LINC02648 Gene

LINC02648 (Long Intergenic Non-Protein Coding RNA 2648) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02648 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02648 Gene

Genomics for LINC02648 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02648 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J006621 Enhancer 0.6 Ensembl 0.7 +3.2 3167 0.4 JUND ZNF10 ZNF639 ZNF843 ZNF2 ZNF189 INSM2 TRIM28 ZNF366 ZEB2 LINC02648 piR-32559-036 PRKCQ LOC107984203
GH10J006590 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -25.8 -25795 3.7 ZFP91 SCRT1 GATA2 IKZF2 TRIM22 MTA2 POLR2A RELB SCRT2 PRKCQ lnc-PRKCQ-3 PRKCQ-AS1 LINC02648 LOC107984203
GH10J006609 Enhancer 0.5 Ensembl ENCODE dbSUPER 0.4 -7.5 -7533 3.4 LINC02648 lnc-PRKCQ-3 PRKCQ PRKCQ-AS1 LOC107984203
GH10J006606 Enhancer 0.5 Ensembl ENCODE dbSUPER 0.4 -11.5 -11533 2.2 LINC02648 lnc-PRKCQ-3 PRKCQ PRKCQ-AS1 LOC107984203
GH10J006595 Enhancer 0.6 ENCODE dbSUPER 0.4 -22.7 -22664 1.3 ATF2 ATF3 ATF7 lnc-PRKCQ-3 PRKCQ PRKCQ-AS1 LINC02648 LOC107984203
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02648 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02648 Gene

Latest Assembly
chr10:6,618,634-6,639,781
(GRCh38/hg38)
Size:
21,148 bases
Orientation:
Plus strand

Previous Assembly
chr10:6,660,678-6,681,743
(GRCh37/hg19 by Entrez Gene)
Size:
21,066 bases
Orientation:
Plus strand

chr10:6,660,678-6,667,308
(GRCh37/hg19 by Ensembl)
Size:
6,631 bases
Orientation:
Plus strand

Genomic View for LINC02648 Gene

Genes around LINC02648 on UCSC Golden Path with GeneCards custom track
LINC02648 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02648 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02648 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02648 Gene

Proteins for LINC02648 Gene

Post-translational modifications for LINC02648 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02648 Gene

Domains & Families for LINC02648 Gene

Gene Families for LINC02648 Gene

genes like me logo Genes that share domains with LINC02648: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02648 Gene

Function for LINC02648 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02648 Gene

Localization for LINC02648 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02648 Gene

Pathways & Interactions for LINC02648 Gene

PathCards logo

SuperPathways for LINC02648 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02648 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02648 Gene

Drugs & Compounds for LINC02648 Gene

No Compound Related Data Available

Transcripts for LINC02648 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02648 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075ADD8_9606 lncRNA 3470 3

RefSeq: NR_120634,

LNCipedia: PRKCQ-AS1:53,

NONCODE: NONHSAT155045.1,

URS000014B2F8_9606 lncRNA 504 3

Ensembl: ENST00000448835 (view in UCSC) ,

LncBook: HSALNT0158450, HSALNT0158452,

LNCipedia: PRKCQ-AS1:52,

URS00008B77FC_9606 lncRNA 1012 3

LncBook: HSALNT0158454,

LNCipedia: PRKCQ-AS1:54,

NONCODE: NONHSAT155046.1,

URS00008B2934_9606 lncRNA 641 3

LncBook: HSALNT0158447,

LNCipedia: PRKCQ-AS1:50,

NONCODE: NONHSAT011241.2,

URS00008BBB10_9606 lncRNA 503 3

LncBook: HSALNT0158451,

LNCipedia: PRKCQ-AS1:51,

NONCODE: NONHSAT011242.2,

LINC02648 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02648 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02648 Gene

No ASD Table

Relevant External Links for LINC02648 Gene

GeneLoc Exon Structure for
LINC02648

Expression for LINC02648 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02648

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02648 Gene

Orthologs for LINC02648 Gene

Evolution for LINC02648 Gene

ENSEMBL:
Gene Tree for LINC02648 (if available)
TreeFam:
Gene Tree for LINC02648 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02648

No data available for Orthologs for LINC02648 Gene

Paralogs for LINC02648 Gene

No data available for Paralogs for LINC02648 Gene

Variants for LINC02648 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02648 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02648 Gene

Variant ID Type Subtype PubMed ID
dgv125n67 CNV gain 20364138
dgv667n100 CNV loss 25217958
dgv668n100 CNV loss 25217958
dgv8e203 CNV loss 21179565
dgv950n54 CNV loss 21841781
dgv951n54 CNV gain 21841781
esv2657814 CNV deletion 23128226
esv2732040 CNV deletion 23290073
esv2759730 CNV loss 17122850
esv29228 CNV gain 19812545
esv3545843 CNV deletion 23714750
esv3576050 CNV gain 25503493
esv3578600 CNV loss 25503493
esv3622250 CNV loss 21293372
esv3891746 CNV loss 25118596
esv3891750 CNV gain 25118596
nsv1042376 CNV gain 25217958
nsv1047309 CNV gain 25217958
nsv1161926 CNV deletion 26073780
nsv437095 CNV loss 16327808
nsv438163 CNV loss 16468122
nsv442171 CNV loss 18776908
nsv466729 CNV gain 19166990
nsv470918 CNV gain 18288195
nsv514568 CNV gain+loss 21397061
nsv517486 CNV gain+loss 19592680
nsv549913 CNV loss 21841781
nsv549922 CNV loss 21841781
nsv549924 CNV loss 21841781
nsv549925 CNV loss 21841781
nsv549929 CNV gain+loss 21841781
nsv7198 OTHER inversion 18451855
nsv818743 CNV loss 17921354
nsv819619 CNV gain 19587683
nsv820451 CNV deletion 20802225
nsv8601 CNV gain 18304495

Additional Variant Information for LINC02648 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02648
Leiden Open Variation Database (LOVD)
LINC02648

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02648 Gene

Disorders for LINC02648 Gene

No disorders were found for LINC02648 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02648 Gene

Publications for LINC02648 Gene

No publications were found for LINC02648 Gene.

No data available for Mastermind for LINC02648 Gene

Products for LINC02648 Gene

Sources for LINC02648 Gene