Aliases for LINC02644 Gene

Data sources for LINC02644 Gene:

RNA type for LINC02644 Gene

lncRNA

Aliases for LINC02644 Gene

External Ids for LINC02644 Gene

Summaries for LINC02644 Gene

GeneCards Summary for LINC02644 Gene

LINC02644 (Long Intergenic Non-Protein Coding RNA 2644) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02644 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02644 Gene

Genomics for LINC02644 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02644 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J030722 Enhancer 0.3 Ensembl 250.7 -0.2 -217 1.6 SPI1 NRF1 LINC02644 SVIL2P HSALNG0077057 LYZL2 ZNF438
GH10J030726 Enhancer 0.7 ENCODE 0.7 +3.7 3729 0.2 ZNF207 ZNF654 CTCF REST TRIM22 RAD21 SMC3 SMARCA5 ZNF2 ELF1 SVIL2P LINC02644 RF00017-572 LYZL2 ZNF438
GH10J030719 Enhancer 0.6 Ensembl ENCODE 0.7 -4.1 -4117 0.2 CEBPB PKNOX1 KLF1 HLF LINC02644 HSALNG0077057 LYZL2 ZNF438
GH10J030736 Enhancer 1 Ensembl ENCODE 0.4 +14.3 14287 3 BCLAF1 SP1 BCL11A IRF4 EBF1 CBFB MAX SMARCA5 NFE2 TAF1 RF00017-572 SVIL2P LINC02644 LYZL2 ZNF438
GH10J030720 Enhancer 0.5 Ensembl 0.7 -3.1 -3117 0.6 SMAD4 ETV4 RARA DPF2 GATA2 TCF7 ESRRA LINC02644 HSALNG0077057 LYZL2 ZNF438
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02644 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02644 Gene

Latest Assembly
chr10:30,723,218-30,723,740
(GRCh38/hg38)
Size:
523 bases
Orientation:
Plus strand

Previous Assembly
chr10:31,012,148-31,012,669
(GRCh37/hg19 by Entrez Gene)
Size:
522 bases
Orientation:
Plus strand

chr10:31,012,180-31,012,669
(GRCh37/hg19 by Ensembl)
Size:
490 bases
Orientation:
Plus strand

Genomic View for LINC02644 Gene

Genes around LINC02644 on UCSC Golden Path with GeneCards custom track
LINC02644 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02644 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02644 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02644 Gene

Proteins for LINC02644 Gene

Post-translational modifications for LINC02644 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02644 Gene

Domains & Families for LINC02644 Gene

Gene Families for LINC02644 Gene

genes like me logo Genes that share domains with LINC02644: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02644 Gene

Function for LINC02644 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02644 Gene

Localization for LINC02644 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02644 Gene

Pathways & Interactions for LINC02644 Gene

PathCards logo

SuperPathways for LINC02644 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02644 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02644 Gene

Drugs & Compounds for LINC02644 Gene

No Compound Related Data Available

Transcripts for LINC02644 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02644 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00000B11C2_9606 lncRNA 410 4

Ensembl: ENST00000416310 (view in UCSC) ,

LncBook: HSALNT0160831,

LNCipedia: lnc-MAP3K8-195:2,

NONCODE: NONHSAT012590.2,

URS0000A76472_9606 lncRNA 440 1

RefSeq: NR_134497,

URS0000D580AE_9606 lncRNA 442 1

LNCipedia: lnc-MAP3K8-195:1,

LINC02644 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02644 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02644 Gene

No ASD Table

Relevant External Links for LINC02644 Gene

GeneLoc Exon Structure for
LINC02644

Expression for LINC02644 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02644 Gene

Orthologs for LINC02644 Gene

Evolution for LINC02644 Gene

ENSEMBL:
Gene Tree for LINC02644 (if available)
TreeFam:
Gene Tree for LINC02644 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02644

No data available for Orthologs for LINC02644 Gene

Paralogs for LINC02644 Gene

No data available for Paralogs for LINC02644 Gene

Variants for LINC02644 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02644 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02644 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02644
Leiden Open Variation Database (LOVD)
LINC02644

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02644 Gene

Disorders for LINC02644 Gene

Additional Disease Information for LINC02644

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02644 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02644 Gene

Publications for LINC02644 Gene

No publications were found for LINC02644 Gene.

No data available for Mastermind for LINC02644 Gene

Products for LINC02644 Gene

Sources for LINC02644 Gene