Aliases for LINC02643 Gene

Data sources for LINC02643 Gene:

RNA type for LINC02643 Gene

lncRNA

Aliases for LINC02643 Gene

External Ids for LINC02643 Gene

Summaries for LINC02643 Gene

GeneCards Summary for LINC02643 Gene

LINC02643 (Long Intergenic Non-Protein Coding RNA 2643) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02643 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02643 Gene

Genomics for LINC02643 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02643 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J021372 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 250.7 +3.0 2985 1.1 ZNF600 ZIC2 KLF7 IRF2 KLF9 PRDM1 SP2 ZFP91 BHLHE40 SP1 LINC02643 piR-55110-013 NEBL RNU6-15P piR-61053-002 MLLT10
GH10J021376 Enhancer 0.3 Ensembl dbSUPER 250.7 +0.3 332 0.2 LINC02643 piR-55110-013 RNU6-15P NEBL MLLT10
GH10J021361 Enhancer 1.2 ENCODE CraniofacialAtlas dbSUPER 0.4 +12.1 12101 5.8 ZNF600 CEBPA CEBPB ZNF639 ZNF217 MBD2 ELF1 CTBP1 RAD21 SMC3 MLLT10 RNU6-15P LINC02643 piR-55110-013 piR-61053-002 NEBL
GH10J021367 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +6.9 6933 3 SP1 SPI1 JUND ZBTB33 ZNF652 HDAC2 RFX1 MEIS2 ZMYM3 IKZF1 RNU6-15P LINC02643 piR-55110-013 piR-61053-002 NEBL MLLT10
GH10J021349 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +25.4 25356 2 ZNF600 ZNF10 FEZF1 ZNF639 ZEB1 ZNF843 PRDM6 BHLHE40 ZBTB48 ZNF2 piR-46847-033 piR-61053-002 MLLT10 piR-57460-044 LINC02643 NEBL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02643 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02643 Gene

Latest Assembly
chr10:21,336,090-21,376,033
(GRCh38/hg38)
Size:
39,944 bases
Orientation:
Minus strand

Previous Assembly
chr10:21,629,162-21,661,879
(GRCh37/hg19 by Entrez Gene)
Size:
32,718 bases
Orientation:
Minus strand

chr10:21,629,162-21,661,879
(GRCh37/hg19 by Ensembl)
Size:
32,718 bases
Orientation:
Minus strand

Genomic View for LINC02643 Gene

Genes around LINC02643 on UCSC Golden Path with GeneCards custom track
LINC02643 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02643 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02643 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02643 Gene

Proteins for LINC02643 Gene

Post-translational modifications for LINC02643 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02643 Gene

Domains & Families for LINC02643 Gene

Gene Families for LINC02643 Gene

genes like me logo Genes that share domains with LINC02643: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02643 Gene

Function for LINC02643 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02643 Gene

Localization for LINC02643 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02643 Gene

Pathways & Interactions for LINC02643 Gene

PathCards logo

SuperPathways for LINC02643 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02643 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02643 Gene

Drugs & Compounds for LINC02643 Gene

No Compound Related Data Available

Transcripts for LINC02643 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02643 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000529FE3_9606 lncRNA 444 5

RefSeq: NR_155751,

Ensembl: ENST00000433460 (view in UCSC) ,

LncBook: HSALNT0159808,

LNCipedia: lnc-CASC10-2:1, lnc-CASC10-2:3,

NONCODE: NONHSAT011703.2,

URS00009BBF2A_9606 lncRNA 439 2

LncBook: HSALNT0159809,

NONCODE: NONHSAT156754.1,

URS0001BEBE6F_9606 lncRNA 2360 1

LncBook: HSALNT0159812,

URS0001BF3B4B_9606 lncRNA 1713 1

LncBook: HSALNT0159811,

URS0001BF3FC7_9606 lncRNA 1713 1

LncBook: HSALNT0159813,

LINC02643 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02643 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02643 Gene

No ASD Table

Relevant External Links for LINC02643 Gene

GeneLoc Exon Structure for
LINC02643

Expression for LINC02643 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02643 Gene

Orthologs for LINC02643 Gene

Evolution for LINC02643 Gene

ENSEMBL:
Gene Tree for LINC02643 (if available)
TreeFam:
Gene Tree for LINC02643 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02643

No data available for Orthologs for LINC02643 Gene

Paralogs for LINC02643 Gene

No data available for Paralogs for LINC02643 Gene

Variants for LINC02643 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02643 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02643 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02643
Leiden Open Variation Database (LOVD)
LINC02643

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02643 Gene

Disorders for LINC02643 Gene

No disorders were found for LINC02643 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02643 Gene

Publications for LINC02643 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3

No data available for Mastermind for LINC02643 Gene

Products for LINC02643 Gene

Sources for LINC02643 Gene