Aliases for LINC02642 Gene

Data sources for LINC02642 Gene:

RNA type for LINC02642 Gene

lncRNA

Aliases for LINC02642 Gene

External Ids for LINC02642 Gene

Summaries for LINC02642 Gene

GeneCards Summary for LINC02642 Gene

LINC02642 (Long Intergenic Non-Protein Coding RNA 2642) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02642 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02642 Gene

Genomics for LINC02642 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02642 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J007470 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 250.7 +1.1 1104 2.5 BCLAF1 SP1 ZNF207 BCL11A ZNF592 TARDBP TRIM22 IRF4 EBF1 CBFB LINC02642 SFMBT2 lnc-ITIH2-8 ITIH5
GH10J007474 Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.7 -2.5 -2522 1.6 ZNF600 ZIC2 ZNF341 SIN3A ZBTB48 SCRT1 GLIS1 PRDM4 ZBTB8A PKNOX1 SFMBT2 LINC02642 lnc-ITIH2-3 ITIH5
GH10J007480 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -10.5 -10459 6.5 BCLAF1 BCL11A SIN3A TRIM22 ZNF513 IRF4 ZNF316 EBF1 MAX SMARCA5 lnc-ITIH2-3 SFMBT2 TAF3 KIN RNU6-535P RF00026-117 LINC02642 lnc-ITIH5-1 ITIH5
GH10J007478 Promoter/Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -6.1 -6137 1.4 TRIM22 SMARCA5 TCF12 ZNF217 MTA2 RUNX3 MLLT1 LINC02642 lnc-ITIH2-3 SFMBT2 ITIH5
GH10J007457 Enhancer 0.9 Ensembl ENCODE 0.4 +14.8 14784 4 SP1 BCL11A CBFB TAF1 SPI1 IKZF1 HDGF NR2F1 ATF2 JUNB RNU6-535P SFMBT2 LINC02642 lnc-ITIH2-8 ITIH5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02642 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02642 Gene

Latest Assembly
chr10:7,444,340-7,472,984
(GRCh38/hg38)
Size:
28,645 bases
Orientation:
Minus strand

Previous Assembly
chr10:7,487,520-7,513,904
(GRCh37/hg19 by Ensembl)
Size:
26,385 bases
Orientation:
Minus strand

Genomic View for LINC02642 Gene

Genes around LINC02642 on UCSC Golden Path with GeneCards custom track
LINC02642 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02642 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02642 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02642 Gene

Proteins for LINC02642 Gene

Post-translational modifications for LINC02642 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02642 Gene

Domains & Families for LINC02642 Gene

Gene Families for LINC02642 Gene

genes like me logo Genes that share domains with LINC02642: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02642 Gene

Function for LINC02642 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02642 Gene

Localization for LINC02642 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02642 Gene

Pathways & Interactions for LINC02642 Gene

PathCards logo

SuperPathways for LINC02642 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02642 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02642 Gene

Drugs & Compounds for LINC02642 Gene

No Compound Related Data Available

Transcripts for LINC02642 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02642 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000019E21C_9606 lncRNA 557 3

Ensembl: ENST00000420395 (view in UCSC) ,

LNCipedia: lnc-SFMBT2-1:1,

NONCODE: NONHSAT011282.2,

URS0000EF3EE0_9606 lncRNA 2800 1

Ensembl: ENST00000660269 (view in UCSC) ,

URS0000EECAB5_9606 lncRNA 1896 1

Ensembl: ENST00000670632 (view in UCSC) ,

URS0001BF9C96_9606 lncRNA 3757 1

LncBook: HSALNT0158560,

URS0001BD3CBB_9606 lncRNA 3189 1

LncBook: HSALNT0158559,

LINC02642 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02642 Gene

No ASD Table

Relevant External Links for LINC02642 Gene

GeneLoc Exon Structure for
LINC02642

No data available for mRNA/cDNA for LINC02642 Gene

Expression for LINC02642 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02642

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02642 Gene

Orthologs for LINC02642 Gene

Evolution for LINC02642 Gene

ENSEMBL:
Gene Tree for LINC02642 (if available)
TreeFam:
Gene Tree for LINC02642 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02642

No data available for Orthologs for LINC02642 Gene

Paralogs for LINC02642 Gene

No data available for Paralogs for LINC02642 Gene

Variants for LINC02642 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02642 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02642 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02642
Leiden Open Variation Database (LOVD)
LINC02642

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02642 Gene

Disorders for LINC02642 Gene

No disorders were found for LINC02642 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02642 Gene

Publications for LINC02642 Gene

No publications were found for LINC02642 Gene.

Products for LINC02642 Gene

Sources for LINC02642 Gene