Aliases for LINC02633 Gene

Data sources for LINC02633 Gene:

Subcategory (RNA class) for LINC02633 Gene

lncRNA

Aliases for LINC02633 Gene

External Ids for LINC02633 Gene

Previous GeneCards Identifiers for LINC02633 Gene

  • GC10P043325

Summaries for LINC02633 Gene

GeneCards Summary for LINC02633 Gene

LINC02633 (Long Intergenic Non-Protein Coding RNA 2633) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02633 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02633 Gene

Genomics for LINC02633 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02633 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J043322 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas 0.4 +9.5 9468 1.3 SIN3A SP1 TAF1 BMI1 RFX1 CSDE1 ZNF512 POLR2A PKNOX1 TARDBP ENSG00000230555 CSGALNACT2 LOC105378271 piR-60246-022 LINC02633 piR-55655-042 FXYD4 RASGEF1A
GH10J043308 Enhancer 0.6 Ensembl 0.7 -3.7 -3689 2.8 CEBPA RXRA ZBTB33 HNF4A BHLHE40 RAD21 ATF2 REST MAX SP1 ENSG00000236114 HSALNG0077536 LINC02633 RASGEF1A FXYD4
GH10J043331 Enhancer 0.8 Ensembl ENCODE 0.4 +19.6 19610 16.6 MCM3 GABPA ZNF341 BCL6 ZNF316 JUND NFE2 ZNF189 MAFG ZNF384 RASGEF1A HNRNPF ENSG00000230555 HNRNPA3P1 RNU7-193P BMS1 ZNF239 FXYD4 ENSG00000236114 piR-31432-050
GH10J043315 Enhancer 0.3 Ensembl ENCODE 0.7 +2.3 2338 1 CSGALNACT2-DT ZNF239 LOC105378271 LINC02633 RASGEF1A FXYD4
GH10J043305 Enhancer 0.3 ENCODE 0.4 -7.5 -7452 0.1 MAX USF2 HSALNG0077536 LINC02633 RASGEF1A FXYD4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02633 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02633 Gene

Latest Assembly
chr10:43,313,490-43,331,223
(GRCh38/hg38)
Size:
17,734 bases
Orientation:
Plus strand

Previous Assembly
chr10:43,819,113-43,823,380
(GRCh37/hg19 by Ensembl)
Size:
4,268 bases
Orientation:
Plus strand

Genomic View for LINC02633 Gene

Genes around LINC02633 on UCSC Golden Path with GeneCards custom track
LINC02633 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02633 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02633 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02633 Gene

Proteins for LINC02633 Gene

Post-translational modifications for LINC02633 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02633 Gene

Domains & Families for LINC02633 Gene

Gene Families for LINC02633 Gene

genes like me logo Genes that share domains with LINC02633: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02633 Gene

Function for LINC02633 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02633 Gene

Localization for LINC02633 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02633 Gene

Pathways & Interactions for LINC02633 Gene

PathCards logo

SuperPathways for LINC02633 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02633 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02633 Gene

Drugs & Compounds for LINC02633 Gene

No Compound Related Data Available

Transcripts for LINC02633 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02633 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000097F8E_9606 lncRNA 391 4

Ensembl: ENST00000451438 (view in UCSC) ,

LncBook: HSALNT0161834,

LNCipedia: lnc-FXYD4-1:2,

NONCODE: NONHSAT012951.2,

URS00008BDA19_9606 lncRNA 1289 2

LNCipedia: lnc-FXYD4-1:1,

NONCODE: NONHSAT012950.2,

URS00008B4987_9606 lncRNA 736 2

LNCipedia: lnc-FXYD4-1:3,

NONCODE: NONHSAT012949.2,

URS00009B799F_9606 lncRNA 272 2

LncBook: HSALNT0161831,

NONCODE: NONHSAT155422.1,

URS0001BF7D57_9606 lncRNA 4620 1

LncBook: HSALNT0161832,

LINC02633 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02633 Gene

No ASD Table

Relevant External Links for LINC02633 Gene

GeneLoc Exon Structure for
LINC02633

No data available for mRNA/cDNA for LINC02633 Gene

Expression for LINC02633 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02633 Gene

Orthologs for LINC02633 Gene

Evolution for LINC02633 Gene

ENSEMBL:
Gene Tree for LINC02633 (if available)
TreeFam:
Gene Tree for LINC02633 (if available)

No data available for Orthologs for LINC02633 Gene

Paralogs for LINC02633 Gene

No data available for Paralogs for LINC02633 Gene

Variants for LINC02633 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02633 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02633 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02633

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02633 Gene

Disorders for LINC02633 Gene

No disorders were found for LINC02633 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02633 Gene

Publications for LINC02633 Gene

No publications were found for LINC02633 Gene.

No data available for Mastermind for LINC02633 Gene

Products for LINC02633 Gene

Sources for LINC02633 Gene