Aliases for LINC02628 Gene

Subcategory (RNA class) for LINC02628 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02628 Gene

  • Long Intergenic Non-Protein Coding RNA 2628 2 3 5
  • NONHSAG005590 92
  • HSALNG0077208 167
  • Lnc-NRP1-3 168
  • LINC02628 2

External Ids for LINC02628 Gene

Summaries for LINC02628 Gene

GeneCards Summary for LINC02628 Gene

LINC02628 (Long Intergenic Non-Protein Coding RNA 2628) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02628 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02628 Gene

Genomics for LINC02628 Gene

GeneHancer (GH) Regulatory Elements for LINC02628 Gene

Promoters and enhancers for LINC02628 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J033612 Enhancer 0.6 ENCODE 0.4 -12.6 -12599 0.8 FOS JUND IKZF1 RAD21 RXRA MAX TBX21 HNF4A ZNF217 ZNF24 LINC02628 lnc-NRP1-7
GH10J033566 Enhancer 0.7 Ensembl ENCODE 0.3 +33.8 33841 2 MXI1 ZNF316 MAFF GATA3 ETS1 RCOR1 MEIS2 MAFK CHD2 GATA2 lnc-CCDC7-17 LINC02628 piR-41245-037
GH10J033570 Enhancer 0.6 Ensembl ENCODE 0.3 +29.4 29440 4 FOS CEBPB MAFK STAT3 lnc-CCDC7-17 LINC02628 piR-41245-037
GH10J033559 Enhancer 0.7 Ensembl 0.3 +40.5 40541 0.2 JUND BCL11A ARNT ELF1 IKZF1 BMI1 NR2F1 NFATC3 TBX21 PBX3 lnc-CCDC7-17 piR-41245-037 LINC02628
GH10J033616 Enhancer 0.5 Ensembl 0.4 -17.9 -17860 1.8 ZNF316 ZNF335 NR2F6 MAFF MAFK EMSY LINC02628 lnc-NRP1-7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02628 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02628 Gene

Genomic Locations for LINC02628 Gene
chr10:33,553,583-33,600,041
(GRCh38/hg38)
Size:
46,459 bases
Orientation:
Minus strand
chr10:33,867,859-33,888,968
(GRCh37/hg19)
Size:
21,110 bases
Orientation:
Minus strand

Genomic View for LINC02628 Gene

Genes around LINC02628 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02628 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02628 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02628 Gene

Proteins for LINC02628 Gene

Post-translational modifications for LINC02628 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02628 Gene

Domains & Families for LINC02628 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02628 Gene

Function for LINC02628 Gene

Phenotypes From GWAS Catalog for LINC02628 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02628 Gene

Localization for LINC02628 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02628 Gene

Pathways & Interactions for LINC02628 Gene

PathCards logo

SuperPathways for LINC02628 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02628 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02628 Gene

Drugs & Compounds for LINC02628 Gene

No Compound Related Data Available

Transcripts for LINC02628 Gene

mRNA/cDNA for LINC02628 Gene

3 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02628 Gene

No ASD Table

Relevant External Links for LINC02628 Gene

GeneLoc Exon Structure for
LINC02628

Expression for LINC02628 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02628

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02628 Gene

Orthologs for LINC02628 Gene

Evolution for LINC02628 Gene

ENSEMBL:
Gene Tree for LINC02628 (if available)
TreeFam:
Gene Tree for LINC02628 (if available)

No data available for Orthologs for LINC02628 Gene

Paralogs for LINC02628 Gene

No data available for Paralogs for LINC02628 Gene

Variants for LINC02628 Gene

Additional dbSNP identifiers (rs#s) for LINC02628 Gene

Additional Variant Information for LINC02628 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02628

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02628 Gene

Disorders for LINC02628 Gene

No disorders were found for LINC02628 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02628 Gene

Publications for LINC02628 Gene

No publications were found for LINC02628 Gene.

No data available for Mastermind for LINC02628 Gene

Products for LINC02628 Gene

Sources for LINC02628 Gene