Aliases for LINC02627 Gene

Subcategory (RNA class) for LINC02627 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02627 Gene

  • Long Intergenic Non-Protein Coding RNA 2627 2 3 5
  • NONHSAG006806 92
  • HSALNG0080450 167
  • Lnc-SORCS1-4 168
  • LINC02627 2

External Ids for LINC02627 Gene

Previous GeneCards Identifiers for LINC02627 Gene

  • GC10M105674

Summaries for LINC02627 Gene

GeneCards Summary for LINC02627 Gene

LINC02627 (Long Intergenic Non-Protein Coding RNA 2627) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02627 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02627 Gene

Genomics for LINC02627 Gene

GeneHancer (GH) Regulatory Elements for LINC02627 Gene

Promoters and enhancers for LINC02627 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J105844 Enhancer 0.7 Ensembl ENCODE 10.5 -23.2 -23209 3.6 RELA IKZF1 BMI1 TCF7 CUX1 ZNF24 MTA2 IKZF2 ARID3A RUNX3 ENSG00000287732 LINC02627
GH10J105858 Enhancer 0.2 Ensembl 9.8 -38.5 -38509 0.2 piR-31292-021 LINC02627 ENSG00000287732
GH10J105972 Enhancer 0.3 CraniofacialAtlas 4.4 -152.9 -152851 0.8 POLR2A LINC02627 ENSG00000286609 piR-36308
GH10J105963 Enhancer 0.2 Ensembl 6.2 -143.3 -143309 0.6 LINC02627 piR-36308 ENSG00000286609
GH10J105837 Enhancer 0.6 ENCODE 0.4 -17.8 -17764 1.2 EP300 FOXA2 ZNF384 BMI1 PRDM1 TBX21 TARDBP YY1 ZNF24 RFX1 ENSG00000287732 LINC02627
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02627 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02627 Gene

Genomic Locations for LINC02627 Gene
chr10:105,489,596-105,820,392
(GRCh38/hg38)
Size:
330,797 bases
Orientation:
Minus strand
chr10:107,568,533-107,578,955
(GRCh37/hg19)
Size:
10,423 bases
Orientation:
Minus strand

Genomic View for LINC02627 Gene

Genes around LINC02627 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02627 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02627 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02627 Gene

Proteins for LINC02627 Gene

Post-translational modifications for LINC02627 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02627 Gene

Domains & Families for LINC02627 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02627 Gene

Function for LINC02627 Gene

Phenotypes From GWAS Catalog for LINC02627 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02627 Gene

Localization for LINC02627 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02627 Gene

Pathways & Interactions for LINC02627 Gene

PathCards logo

SuperPathways for LINC02627 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02627 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02627 Gene

Drugs & Compounds for LINC02627 Gene

No Compound Related Data Available

Transcripts for LINC02627 Gene

mRNA/cDNA for LINC02627 Gene

14 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
10 NONCODE transcripts :
9 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02627 Gene

No ASD Table

Relevant External Links for LINC02627 Gene

GeneLoc Exon Structure for
LINC02627

Expression for LINC02627 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02627

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02627 Gene

Orthologs for LINC02627 Gene

Evolution for LINC02627 Gene

ENSEMBL:
Gene Tree for LINC02627 (if available)
TreeFam:
Gene Tree for LINC02627 (if available)

No data available for Orthologs for LINC02627 Gene

Paralogs for LINC02627 Gene

No data available for Paralogs for LINC02627 Gene

Variants for LINC02627 Gene

Additional dbSNP identifiers (rs#s) for LINC02627 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02627 Gene

Variant ID Type Subtype PubMed ID
esv2669641 CNV deletion 23128226
esv2759780 CNV gain+loss 17122850
nsv1040384 CNV gain 25217958
nsv1047446 CNV gain 25217958
nsv1048131 CNV loss 25217958
nsv1050533 CNV loss 25217958
nsv522763 CNV loss 19592680
nsv527263 CNV loss 19592680
nsv527793 CNV gain 19592680
nsv552099 CNV loss 21841781
nsv831975 CNV loss 17160897
nsv948178 CNV duplication 23825009

Additional Variant Information for LINC02627 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02627

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02627 Gene

Disorders for LINC02627 Gene

No disorders were found for LINC02627 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02627 Gene

Publications for LINC02627 Gene

No publications were found for LINC02627 Gene.

No data available for Mastermind for LINC02627 Gene

Products for LINC02627 Gene

Sources for LINC02627 Gene