Aliases for LINC02627 Gene

Data sources for LINC02627 Gene:

RNA type for LINC02627 Gene

lncRNA

Aliases for LINC02627 Gene

External Ids for LINC02627 Gene

Previous GeneCards Identifiers for LINC02627 Gene

  • GC10M105674
  • GC10M105489

Summaries for LINC02627 Gene

GeneCards Summary for LINC02627 Gene

LINC02627 (Long Intergenic Non-Protein Coding RNA 2627) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02627 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02627 Gene

Genomics for LINC02627 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02627 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J105844 Enhancer 0.7 Ensembl ENCODE 10.2 +126.5 126538 3.6 ZNF24 IKZF1 BMI1 TCF7 ARID3A IKZF2 MTA2 RUNX3 RELB ENSG00000287732 LINC02627 lnc-SORCS1-9
GH10J105963 Enhancer 0.2 Ensembl 6.6 +6.5 6538 0.8 LINC02627 piR-36308 HSALNG0080458
GH10J105972 Enhancer 0.2 CraniofacialAtlas 5 -3.1 -3104 0.8 LINC02627 ENSG00000286609
GH10J105952 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 0.4 +17.6 17618 1.4 POLR2A FOXA2 BHLHE40 ELF1 RAD21 PKNOX1 SPI1 RFX1 SP1 HSALNG0080458 piR-36308 LINC02627
GH10J105987 Enhancer 0.5 ENCODE CraniofacialAtlas 0.4 -17.1 -17135 0.9 ZNF518A ZBTB11 ENSG00000286609 LINC02627
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02627 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02627 Gene

Latest Assembly
chr10:105,460,510-105,970,139
(GRCh38/hg38)
Size:
509,630 bases
Orientation:
Minus strand

Previous Assembly
chr10:107,433,368-107,580,091
(GRCh37/hg19 by Entrez Gene)
Size:
146,724 bases
Orientation:
Minus strand

chr10:107,568,533-107,578,955
(GRCh37/hg19 by Ensembl)
Size:
10,423 bases
Orientation:
Minus strand

Genomic View for LINC02627 Gene

Genes around LINC02627 on UCSC Golden Path with GeneCards custom track
LINC02627 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02627 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02627 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02627 Gene

Proteins for LINC02627 Gene

Post-translational modifications for LINC02627 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02627 Gene

Domains & Families for LINC02627 Gene

Gene Families for LINC02627 Gene

genes like me logo Genes that share domains with LINC02627: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02627 Gene

Function for LINC02627 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02627 Gene

Localization for LINC02627 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02627 Gene

Pathways & Interactions for LINC02627 Gene

PathCards logo

SuperPathways for LINC02627 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02627 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02627 Gene

Drugs & Compounds for LINC02627 Gene

No Compound Related Data Available

Transcripts for LINC02627 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02627 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000759AE0_9606 lncRNA 509 2

RefSeq: NR_120625,

LNCipedia: lnc-SORCS1-4:6,

URS0000EF43B5_9606 lncRNA 1569 1

Ensembl: ENST00000663554 (view in UCSC) ,

URS0000EF47B8_9606 lncRNA 1213 1

Ensembl: ENST00000447757 (view in UCSC) ,

URS0000EF4760_9606 lncRNA 1161 1

Ensembl: ENST00000666271 (view in UCSC) ,

URS00008B5F42_9606 lncRNA 1114 3

LncBook: HSALNT0167737,

LNCipedia: lnc-SORCS1-4:4,

NONCODE: NONHSAT016249.2,

LINC02627 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02627 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02627 Gene

No ASD Table

Relevant External Links for LINC02627 Gene

GeneLoc Exon Structure for
LINC02627

Expression for LINC02627 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02627

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02627 Gene

Orthologs for LINC02627 Gene

Evolution for LINC02627 Gene

ENSEMBL:
Gene Tree for LINC02627 (if available)
TreeFam:
Gene Tree for LINC02627 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02627

No data available for Orthologs for LINC02627 Gene

Paralogs for LINC02627 Gene

No data available for Paralogs for LINC02627 Gene

Variants for LINC02627 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02627 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02627 Gene

Variant ID Type Subtype PubMed ID
esv2669641 CNV deletion 23128226
esv2759780 CNV gain+loss 17122850
nsv1040384 CNV gain 25217958
nsv1047446 CNV gain 25217958
nsv1048131 CNV loss 25217958
nsv1050533 CNV loss 25217958
nsv522763 CNV loss 19592680
nsv527263 CNV loss 19592680
nsv527793 CNV gain 19592680
nsv552099 CNV loss 21841781
nsv831975 CNV loss 17160897
nsv948178 CNV duplication 23825009

Additional Variant Information for LINC02627 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02627
Leiden Open Variation Database (LOVD)
LINC02627

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02627 Gene

Disorders for LINC02627 Gene

No disorders were found for LINC02627 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02627 Gene

Publications for LINC02627 Gene

No publications were found for LINC02627 Gene.

No data available for Mastermind for LINC02627 Gene

Products for LINC02627 Gene

Sources for LINC02627 Gene